Variant report

Variant	rs1854548
Chromosome Location	chr9:18375813-18375814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10810959	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1329723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1340046	0.87[AFR][1000 genomes]
rs1411152	1.00[AMR][1000 genomes]
rs1411153	0.81[AFR][1000 genomes]
rs1417038	1.00[AMR][1000 genomes]
rs1417041	0.90[AFR][1000 genomes]
rs2265843	1.00[AMR][1000 genomes]
rs2265962	1.00[AMR][1000 genomes]
rs2493745	1.00[AMR][1000 genomes]
rs2493746	1.00[AMR][1000 genomes]
rs2585579	1.00[AMR][1000 genomes]
rs2791444	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2809855	1.00[AMR][1000 genomes]
rs2819202	1.00[AMR][1000 genomes]
rs4961464	0.87[AFR][1000 genomes]
rs57035045	1.00[AMR][1000 genomes]
rs61086890	1.00[AMR][1000 genomes]
rs7028195	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426941	1.00[AMR][1000 genomes]
rs73426948	1.00[AMR][1000 genomes]
rs7848714	0.82[AFR][1000 genomes]
rs9407898	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9407901	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18368400-18381800	Weak transcription	Aorta	Aorta
2	chr9:18372600-18378000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:18375200-18378800	Weak transcription	HUVEC	blood vessel

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