Variant report

Variant	rs9407898
Chromosome Location	chr9:18361168-18361169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10810959	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1329723	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1340046	0.84[AFR][1000 genomes]
rs1411152	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1411153	0.86[AFR][1000 genomes]
rs1417038	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1417041	0.81[AFR][1000 genomes]
rs1854548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2265843	1.00[AMR][1000 genomes]
rs2265962	1.00[AMR][1000 genomes]
rs2493745	1.00[AMR][1000 genomes]
rs2493746	1.00[AMR][1000 genomes]
rs2585579	1.00[AMR][1000 genomes]
rs2791444	1.00[AMR][1000 genomes]
rs2809855	1.00[AMR][1000 genomes]
rs2819202	1.00[AMR][1000 genomes]
rs57035045	1.00[AMR][1000 genomes]
rs61086890	1.00[AMR][1000 genomes]
rs7028195	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426941	1.00[AMR][1000 genomes]
rs73426948	1.00[AMR][1000 genomes]
rs7848714	0.85[AFR][1000 genomes]
rs9407901	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1831194	chr9:18355044-18369216	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18333400-18368200	Weak transcription	Aorta	Aorta
2	chr9:18346600-18362000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:18351800-18361600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:18356400-18363200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:18357400-18364200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:18358000-18364200	Enhancers	NHDF-Ad	bronchial
7	chr9:18358000-18364400	Enhancers	Osteobl	bone
8	chr9:18358800-18362600	Weak transcription	Primary B cells from cord blood	blood
9	chr9:18359400-18362000	Enhancers	Fetal Heart	heart
10	chr9:18359800-18363000	Weak transcription	HSMMtube	muscle
11	chr9:18360000-18364000	Enhancers	Fetal Lung	lung
12	chr9:18360200-18361600	Enhancers	HUVEC	blood vessel
13	chr9:18360400-18361400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:18360400-18361600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:18360400-18361800	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:18360400-18363000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:18360600-18361800	Weak transcription	HSMM	muscle
18	chr9:18360600-18362400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:18360600-18362800	Weak transcription	NH-A	brain
20	chr9:18360600-18363200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:18360600-18363200	Weak transcription	Psoas Muscle	Psoas
22	chr9:18360800-18361200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:18361000-18362800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:18361000-18363000	Weak transcription	NHLF	lung

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