Variant report

Variant	rs2265962
Chromosome Location	chr9:18275556-18275557
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10810959	1.00[AMR][1000 genomes]
rs1329723	1.00[AMR][1000 genomes]
rs1411152	1.00[AMR][1000 genomes]
rs1417038	1.00[AMR][1000 genomes]
rs1854548	1.00[AMR][1000 genomes]
rs2265843	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2493745	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2493746	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2585579	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2791444	1.00[AMR][1000 genomes]
rs2809853	0.90[AFR][1000 genomes]
rs2809855	1.00[AMR][1000 genomes]
rs2819202	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56137310	1.00[AMR][1000 genomes]
rs57035045	1.00[AMR][1000 genomes]
rs59895508	1.00[AMR][1000 genomes]
rs61086890	1.00[AMR][1000 genomes]
rs7028195	1.00[AMR][1000 genomes]
rs73422913	1.00[AMR][1000 genomes]
rs73424909	1.00[AMR][1000 genomes]
rs73424911	1.00[AMR][1000 genomes]
rs73426941	1.00[AMR][1000 genomes]
rs73426948	1.00[AMR][1000 genomes]
rs9407898	1.00[AMR][1000 genomes]
rs9407901	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1020662	chr9:18270455-18295314	Weak transcription ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv1015972	chr9:18272700-18299446	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv892685	chr9:18273100-18302439	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
8	nsv892686	chr9:18273100-18328341	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18274400-18275600	Enhancers	HUVEC	blood vessel
2	chr9:18274400-18276200	Enhancers	NHEK	skin
3	chr9:18274400-18276400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:18274600-18276000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:18275200-18276800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:18275200-18278400	Weak transcription	Fetal Heart	heart

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