Variant report
| Variant | rs73424909 |
|---|---|
| Chromosome Location | chr9:18149887-18149888 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:18149518..18150319-chr9:18207841..18208492,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs2265843 | 1.00[AMR][1000 genomes] |
| rs2265962 | 1.00[AMR][1000 genomes] |
| rs2493745 | 1.00[AMR][1000 genomes] |
| rs2493746 | 1.00[AMR][1000 genomes] |
| rs2585579 | 1.00[AMR][1000 genomes] |
| rs2809855 | 1.00[AMR][1000 genomes] |
| rs2819202 | 1.00[AMR][1000 genomes] |
| rs56137310 | 1.00[AMR][1000 genomes] |
| rs57035045 | 1.00[AMR][1000 genomes] |
| rs58927234 | 1.00[AMR][1000 genomes] |
| rs59895508 | 1.00[AMR][1000 genomes] |
| rs61086890 | 1.00[AMR][1000 genomes] |
| rs73420847 | 1.00[AMR][1000 genomes] |
| rs73420850 | 1.00[AMR][1000 genomes] |
| rs73420855 | 1.00[AMR][1000 genomes] |
| rs73420856 | 1.00[AMR][1000 genomes] |
| rs73420860 | 1.00[AMR][1000 genomes] |
| rs73420864 | 1.00[AMR][1000 genomes] |
| rs73420866 | 1.00[AMR][1000 genomes] |
| rs73420869 | 1.00[AMR][1000 genomes] |
| rs73420873 | 1.00[AMR][1000 genomes] |
| rs73422913 | 1.00[AMR][1000 genomes] |
| rs73424911 | 1.00[AMR][1000 genomes] |
| rs73426941 | 1.00[AMR][1000 genomes] |
| rs73426948 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021605 | chr9:18002205-18271109 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv466280 | chr9:18033944-18166112 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv471288 | chr9:18033944-18166112 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv613723 | chr9:18033944-18166112 | Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv892679 | chr9:18044802-18226609 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv892680 | chr9:18089614-18267185 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv892681 | chr9:18127068-18250459 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:18149400-18150200 | Enhancers | Fetal Heart | heart |
