Variant report

Variant	rs56137310
Chromosome Location	chr9:18135611-18135612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2265843	1.00[AMR][1000 genomes]
rs2265962	1.00[AMR][1000 genomes]
rs2493745	1.00[AMR][1000 genomes]
rs2585579	1.00[AMR][1000 genomes]
rs2809855	1.00[AMR][1000 genomes]
rs2819202	1.00[AMR][1000 genomes]
rs57035045	1.00[AMR][1000 genomes]
rs58927234	1.00[AMR][1000 genomes]
rs59895508	1.00[AMR][1000 genomes]
rs61086890	1.00[AMR][1000 genomes]
rs73420847	1.00[AMR][1000 genomes]
rs73420850	1.00[AMR][1000 genomes]
rs73420855	1.00[AMR][1000 genomes]
rs73420856	1.00[AMR][1000 genomes]
rs73420860	1.00[AMR][1000 genomes]
rs73420864	1.00[AMR][1000 genomes]
rs73420866	1.00[AMR][1000 genomes]
rs73420869	1.00[AMR][1000 genomes]
rs73420873	1.00[AMR][1000 genomes]
rs73422913	1.00[AMR][1000 genomes]
rs73424909	1.00[AMR][1000 genomes]
rs73424911	1.00[AMR][1000 genomes]
rs73426941	1.00[AMR][1000 genomes]
rs73426948	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18127800-18138400	Weak transcription	Aorta	Aorta
2	chr9:18130000-18135800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:18133200-18137200	Enhancers	Colon Smooth Muscle	Colon
4	chr9:18135000-18136200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:18135000-18136200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:18135200-18136800	Enhancers	Rectal Smooth Muscle	rectum

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