Variant report

Variant	rs1857748
Chromosome Location	chr1:165197261-165197262
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1506945	1.00[YRI][hapmap]
rs1532814	1.00[YRI][hapmap]
rs1557234	1.00[YRI][hapmap]
rs1557235	1.00[YRI][hapmap]
rs2134940	1.00[YRI][hapmap]
rs6426906	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165192000-165197400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:165192200-165200000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:165192200-165204400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:165192800-165197600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:165197000-165198000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:165197200-165197600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:165197200-165198000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:165197200-165198000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:165197200-165198400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:165197200-165198400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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