Variant report
| Variant | rs6426906 |
|---|---|
| Chromosome Location | chr1:165213016-165213017 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10800078 | 1.00[AFR][1000 genomes] |
| rs1155015 | 1.00[AFR][1000 genomes] |
| rs1343547 | 1.00[AFR][1000 genomes] |
| rs1343550 | 1.00[AFR][1000 genomes] |
| rs1343551 | 1.00[AFR][1000 genomes] |
| rs1343552 | 1.00[AFR][1000 genomes] |
| rs1354508 | 1.00[AFR][1000 genomes] |
| rs1394441 | 1.00[AFR][1000 genomes] |
| rs1506945 | 1.00[YRI][hapmap] |
| rs1532814 | 1.00[YRI][hapmap] |
| rs1557234 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1557235 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1857359 | 1.00[AFR][1000 genomes] |
| rs1857748 | 1.00[YRI][hapmap] |
| rs2134938 | 1.00[AFR][1000 genomes] |
| rs2134940 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2135659 | 1.00[AFR][1000 genomes] |
| rs2221542 | 1.00[AFR][1000 genomes] |
| rs4233406 | 1.00[AFR][1000 genomes] |
| rs4656437 | 1.00[AFR][1000 genomes] |
| rs4656438 | 1.00[AFR][1000 genomes] |
| rs4656439 | 1.00[AFR][1000 genomes] |
| rs4657419 | 1.00[AFR][1000 genomes] |
| rs4657421 | 1.00[AFR][1000 genomes] |
| rs6657671 | 1.00[AFR][1000 genomes] |
| rs7517303 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869712 | chr1:164866810-165299085 | Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:165213000-165213200 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
