Variant report

Variant	rs2134940
Chromosome Location	chr1:165209110-165209111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10800078	1.00[AFR][1000 genomes]
rs1155015	1.00[AFR][1000 genomes]
rs1343547	1.00[AFR][1000 genomes]
rs1343550	1.00[AFR][1000 genomes]
rs1343551	1.00[AFR][1000 genomes]
rs1343552	1.00[AFR][1000 genomes]
rs1354508	1.00[AFR][1000 genomes]
rs1394441	1.00[AFR][1000 genomes]
rs1506945	1.00[YRI][hapmap]
rs1532814	1.00[YRI][hapmap]
rs1557234	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1557235	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1857359	1.00[AFR][1000 genomes]
rs1857748	1.00[YRI][hapmap]
rs2134938	1.00[AFR][1000 genomes]
rs2135659	1.00[AFR][1000 genomes]
rs2221542	1.00[AFR][1000 genomes]
rs4233406	1.00[AFR][1000 genomes]
rs4656437	1.00[AFR][1000 genomes]
rs4656438	1.00[AFR][1000 genomes]
rs4656439	1.00[AFR][1000 genomes]
rs4657419	1.00[AFR][1000 genomes]
rs4657421	1.00[AFR][1000 genomes]
rs6426906	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6657671	1.00[AFR][1000 genomes]
rs7517303	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165205400-165211200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165206000-165209800	Weak transcription	Liver	Liver
3	chr1:165208400-165211600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr1:165209000-165209200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr1:165209000-165210400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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