Variant report

Variant	rs1857978
Chromosome Location	chr4:148120210-148120211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10519877	0.84[AFR][1000 genomes]
rs12650484	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395818	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1507486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507488	0.84[AFR][1000 genomes]
rs1507489	0.84[AFR][1000 genomes]
rs1567180	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17022750	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17022758	0.86[ASN][1000 genomes]
rs17022766	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17022775	0.86[ASN][1000 genomes]
rs17473962	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473990	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063130	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357607	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2357610	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2357613	0.86[ASN][1000 genomes]
rs2562885	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2714885	0.87[EUR][1000 genomes]
rs2714893	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2714896	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs33994222	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34007387	0.96[ASN][1000 genomes]
rs34132878	0.86[ASN][1000 genomes]
rs34311913	0.86[ASN][1000 genomes]
rs34644859	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34857595	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35313093	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs35808782	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4333163	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62341527	0.86[ASN][1000 genomes]
rs62341528	0.86[ASN][1000 genomes]
rs62341531	0.96[ASN][1000 genomes]
rs62341532	0.96[ASN][1000 genomes]
rs62341533	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62341534	0.96[ASN][1000 genomes]
rs62341536	0.96[ASN][1000 genomes]
rs62341537	0.96[ASN][1000 genomes]
rs62341557	0.96[ASN][1000 genomes]
rs62342965	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62342966	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62342967	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62342970	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62342993	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62343017	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6537453	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148116200-148120800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:148117800-148121800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:148118000-148120400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:148119000-148120400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:148119000-148120400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:148119000-148120400	Enhancers	HUVEC	blood vessel
7	chr4:148119000-148120800	Enhancers	NHLF	lung
8	chr4:148119200-148120400	Enhancers	HSMM	muscle
9	chr4:148119600-148120400	Enhancers	Fetal Stomach	stomach
10	chr4:148119600-148120400	Enhancers	HSMMtube	muscle
11	chr4:148119600-148120600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:148120000-148120400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:148120000-148123200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr4:148120200-148121400	Weak transcription	Fetal Lung	lung
15	chr4:148120200-148123600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:148120200-148130200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links