Variant report

Variant	rs1863142
Chromosome Location	chr2:67074244-67074245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1110581	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1121247	0.80[AMR][1000 genomes]
rs1420366	0.87[CEU][hapmap]
rs2861183	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2861282	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2861284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6546271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6746213	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7573989	0.80[AMR][1000 genomes]
rs7574079	0.80[AMR][1000 genomes]
rs7587400	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67068400-67080200	Weak transcription	Ovary	ovary
2	chr2:67068600-67077800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:67069000-67081400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:67072400-67077000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:67072800-67076200	Weak transcription	NHLF	lung
6	chr2:67072800-67078000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:67072800-67079200	Enhancers	Pancreas	Pancrea
8	chr2:67073000-67074800	Enhancers	Fetal Intestine Large	intestine
9	chr2:67073000-67076200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:67073000-67076200	Weak transcription	Aorta	Aorta
11	chr2:67073000-67078000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:67073200-67076200	Weak transcription	Fetal Stomach	stomach
13	chr2:67073200-67077800	Weak transcription	NHDF-Ad	bronchial
14	chr2:67073600-67074600	Enhancers	Fetal Intestine Small	intestine
15	chr2:67073600-67074600	Enhancers	Fetal Kidney	kidney
16	chr2:67073800-67074400	Enhancers	Liver	Liver
17	chr2:67073800-67074400	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr2:67073800-67074400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr2:67073800-67074400	Enhancers	Stomach Mucosa	stomach
20	chr2:67073800-67074600	Enhancers	HepG2	liver
21	chr2:67073800-67077800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:67074000-67074600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:67074200-67076200	Weak transcription	Fetal Lung	lung
24	chr2:67074200-67079000	Weak transcription	Gastric	stomach

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