Variant report

Variant	rs2861282
Chromosome Location	chr2:67079832-67079833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1110581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1121247	0.80[AMR][1000 genomes]
rs1420366	0.87[CEU][hapmap]
rs1863142	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2861183	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2861284	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6546271	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6746213	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7573989	0.80[AMR][1000 genomes]
rs7574079	0.80[AMR][1000 genomes]
rs7587400	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67068400-67080200	Weak transcription	Ovary	ovary
2	chr2:67069000-67081400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:67074600-67080000	Weak transcription	Fetal Intestine Small	intestine
4	chr2:67074600-67080000	Weak transcription	Fetal Kidney	kidney
5	chr2:67076200-67081800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:67076200-67082400	Enhancers	Colon Smooth Muscle	Colon
7	chr2:67076200-67082400	Enhancers	NHLF	lung
8	chr2:67077200-67080800	Enhancers	Rectal Smooth Muscle	rectum
9	chr2:67077600-67080000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:67077800-67080200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:67077800-67080600	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:67078400-67081200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:67078800-67080600	Weak transcription	HSMMtube	muscle
14	chr2:67079200-67080200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:67079200-67080200	Weak transcription	Pancreas	Pancrea
16	chr2:67079200-67080200	Weak transcription	NH-A	brain
17	chr2:67079200-67080600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr2:67079200-67080800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr2:67079200-67080800	Weak transcription	Osteobl	bone
20	chr2:67079200-67081000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:67079600-67080000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:67079600-67080000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:67079600-67080000	Weak transcription	Fetal Stomach	stomach
24	chr2:67079600-67080000	Weak transcription	HSMM	muscle
25	chr2:67079600-67080600	Weak transcription	NHDF-Ad	bronchial
26	chr2:67079800-67080800	Enhancers	Fetal Lung	lung

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