Variant report

Variant	rs2861284
Chromosome Location	chr2:67082356-67082357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1110581	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1121247	0.80[AMR][1000 genomes]
rs1420366	0.87[CEU][hapmap];0.94[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs1863142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2861183	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2861282	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6546271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6746213	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7573989	0.80[AMR][1000 genomes]
rs7574079	0.80[AMR][1000 genomes]
rs7587400	0.89[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2861284	PNO1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67076200-67082400	Enhancers	Colon Smooth Muscle	Colon
2	chr2:67076200-67082400	Enhancers	NHLF	lung
3	chr2:67080000-67082400	Enhancers	Fetal Stomach	stomach
4	chr2:67080200-67082400	Enhancers	Ovary	ovary
5	chr2:67080200-67082400	Enhancers	NH-A	brain
6	chr2:67080600-67082400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:67081000-67082400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:67081200-67082400	Enhancers	Fetal Lung	lung
9	chr2:67081400-67082400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:67081400-67082600	Enhancers	Rectal Smooth Muscle	rectum
11	chr2:67081400-67089800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:67081800-67086200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:67082200-67089800	Weak transcription	HSMM	muscle
14	chr2:67082200-67089800	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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