Variant report

Variant	rs1865378
Chromosome Location	chr4:96134839-96134840
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96124156..96126262-chr4:96134196..96136311,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11730446	0.81[JPT][hapmap]
rs12108433	0.83[EUR][1000 genomes]
rs12642020	0.87[CEU][hapmap];0.85[JPT][hapmap]
rs2276322	0.91[CEU][hapmap]
rs2621451	0.87[CEU][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap]
rs2865415	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs36040316	0.80[EUR][1000 genomes]
rs3733212	0.82[CEU][hapmap]
rs3775043	1.00[CEU][hapmap];0.89[GIH][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs3775046	0.82[CEU][hapmap];0.80[GIH][hapmap]
rs3775048	0.82[CEU][hapmap]
rs3775050	0.87[GIH][hapmap];0.90[MEX][hapmap]
rs3775053	0.86[CEU][hapmap]
rs4504262	1.00[LWK][hapmap]
rs4699413	0.86[JPT][hapmap]
rs4699414	0.86[JPT][hapmap]
rs4699415	0.86[JPT][hapmap]
rs4699836	1.00[CEU][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4699837	0.86[MEX][hapmap]
rs62319064	0.82[EUR][1000 genomes]
rs7434638	0.81[MEX][hapmap]
rs7439701	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs7440613	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7676599	0.87[CEU][hapmap]
rs7694043	1.00[LWK][hapmap]
rs9637615	0.83[CEU][hapmap];0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
2	chr4:96124200-96135400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:96124200-96135400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:96126000-96137000	Weak transcription	Ovary	ovary
5	chr4:96133400-96135800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr4:96133600-96135200	Enhancers	Stomach Mucosa	stomach
7	chr4:96133800-96135600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:96133800-96136200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:96133800-96136800	Enhancers	Brain Substantia Nigra	brain
10	chr4:96134000-96135000	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr4:96134000-96135000	Enhancers	Fetal Heart	heart
12	chr4:96134000-96135200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:96134200-96135000	Flanking Active TSS	Brain Cingulate Gyrus	brain
14	chr4:96134200-96135000	Enhancers	Fetal Brain Male	brain
15	chr4:96134200-96136600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:96134200-96136800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:96134400-96135000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:96134400-96136600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr4:96134400-96142600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:96134600-96135000	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr4:96134600-96135000	Enhancers	HSMMtube	muscle
22	chr4:96134600-96135800	Enhancers	Fetal Lung	lung
23	chr4:96134600-96138200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:96134600-96138600	Enhancers	K562	blood
25	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
26	chr4:96134800-96135200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:96134800-96137000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr4:96134800-96137600	Enhancers	Brain Germinal Matrix	brain
29	chr4:96134800-96137800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:96134800-96138000	Weak transcription	Aorta	Aorta
31	chr4:96134800-96140200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:96134800-96147000	Weak transcription	Brain Anterior Caudate	brain

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