Variant report

Variant	rs4699414
Chromosome Location	chr4:96162042-96162043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11730446	0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11737434	0.86[CHB][hapmap]
rs11944846	0.81[CEU][hapmap]
rs12642020	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13118653	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs13119920	0.91[ASN][1000 genomes]
rs1434534	0.84[CEU][hapmap]
rs17023311	1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs1865378	0.86[JPT][hapmap]
rs2276322	0.84[CEU][hapmap]
rs2571037	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2571038	0.88[CEU][hapmap]
rs2621450	0.92[CEU][hapmap]
rs2865383	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2865384	0.81[CEU][hapmap]
rs2865414	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2865415	0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34656389	0.81[EUR][1000 genomes]
rs35351957	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35779969	0.96[ASN][1000 genomes]
rs35780120	0.96[ASN][1000 genomes]
rs36040316	0.85[ASN][1000 genomes]
rs3733210	0.82[ASN][1000 genomes]
rs3775002	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs3775051	0.87[CEU][hapmap]
rs3775053	0.91[CHB][hapmap]
rs4699412	0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4699413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699415	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4699836	1.00[CHB][hapmap];0.96[JPT][hapmap];0.92[ASN][1000 genomes]
rs4699837	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs62319064	0.85[ASN][1000 genomes]
rs6846193	0.88[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs7434638	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7439701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7440613	0.87[CHB][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7676599	0.83[CEU][hapmap]
rs9637615	0.83[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs995062	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
2	chr4:96140600-96163400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:96141600-96163200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:96147800-96163600	Weak transcription	Aorta	Aorta
5	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney
6	chr4:96153800-96163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:96154400-96163400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:96154400-96166200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:96154600-96172000	Weak transcription	Brain Substantia Nigra	brain
10	chr4:96154600-96176800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:96156600-96166200	Weak transcription	Left Ventricle	heart
12	chr4:96160400-96169400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:96160800-96163200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:96160800-96164200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:96161400-96162200	Enhancers	Brain Hippocampus Middle	brain
16	chr4:96161800-96162400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr4:96161800-96163200	Weak transcription	Fetal Lung	lung
18	chr4:96162000-96162200	Weak transcription	Brain Angular Gyrus	brain
19	chr4:96162000-96162600	Enhancers	K562	blood
20	chr4:96162000-96176800	Weak transcription	Brain Anterior Caudate	brain

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