Variant report

Variant	rs2571037
Chromosome Location	chr4:96138183-96138184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10856911	0.87[ASN][1000 genomes]
rs11944846	0.88[CEU][hapmap];0.90[CHD][hapmap];0.88[MEX][hapmap];0.84[ASN][1000 genomes]
rs12513212	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12642020	0.84[CEU][hapmap]
rs13118653	0.84[CEU][hapmap]
rs1434534	0.92[CEU][hapmap];0.87[CHD][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.82[ASN][1000 genomes]
rs2276322	0.91[MEX][hapmap]
rs2571038	0.89[ASW][hapmap];0.88[CEU][hapmap];0.87[CHD][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2621449	0.82[ASN][1000 genomes]
rs2621450	0.91[CEU][hapmap];0.82[ASN][1000 genomes]
rs2621451	0.80[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.91[TSI][hapmap];0.86[ASN][1000 genomes]
rs2865383	0.92[CEU][hapmap];0.92[ASN][1000 genomes]
rs2865384	0.88[CEU][hapmap];0.80[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34656389	0.87[ASN][1000 genomes]
rs35351957	0.86[EUR][1000 genomes]
rs3775043	1.00[MEX][hapmap]
rs3775046	0.83[MEX][hapmap]
rs3775051	0.88[CEU][hapmap]
rs4419475	0.87[ASN][1000 genomes]
rs4699413	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4699414	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs4699415	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs4699837	0.84[CEU][hapmap]
rs59785524	0.87[ASN][1000 genomes]
rs62319060	0.93[ASN][1000 genomes]
rs6846193	0.88[CEU][hapmap]
rs7661876	0.93[ASN][1000 genomes]
rs7676599	0.84[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9307155	0.84[ASN][1000 genomes]
rs995062	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
2	chr4:96134400-96142600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:96134600-96138200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:96134600-96138600	Enhancers	K562	blood
5	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
6	chr4:96134800-96140200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:96134800-96147000	Weak transcription	Brain Anterior Caudate	brain
8	chr4:96135200-96146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:96135400-96138400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:96135600-96153600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:96135800-96140000	Weak transcription	Brain Angular Gyrus	brain
12	chr4:96135800-96140000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:96136200-96138200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:96136200-96138200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:96136800-96138400	Enhancers	Osteobl	bone
16	chr4:96136800-96140800	Strong transcription	Brain Hippocampus Middle	brain
17	chr4:96136800-96141200	Weak transcription	Brain Substantia Nigra	brain
18	chr4:96137000-96138200	Enhancers	Ovary	ovary
19	chr4:96137200-96145000	Weak transcription	Fetal Brain Male	brain
20	chr4:96137400-96138200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr4:96137400-96138200	Enhancers	HSMM	muscle
22	chr4:96137400-96139400	Weak transcription	Fetal Lung	lung
23	chr4:96137400-96140200	Weak transcription	HSMMtube	muscle
24	chr4:96137600-96138600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr4:96137600-96138600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr4:96137600-96139800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr4:96137600-96143000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:96137800-96138400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:96137800-96138600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:96138000-96138200	Enhancers	Aorta	Aorta
31	chr4:96138000-96138400	Enhancers	Dnd41	blood
32	chr4:96138000-96138600	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr4:96138000-96138600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr4:96138000-96140000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:96138000-96141000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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