Variant report

Variant	rs2621449
Chromosome Location	chr4:96135607-96135608
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96124156..96126262-chr4:96134196..96136311,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10856911	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11944846	0.88[ASN][1000 genomes]
rs12513212	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13118653	0.81[EUR][1000 genomes]
rs1434534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571037	0.82[ASN][1000 genomes]
rs2571038	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2621450	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2621451	0.90[ASN][1000 genomes]
rs2865383	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2865384	0.84[ASN][1000 genomes]
rs34656389	0.83[ASN][1000 genomes]
rs3775051	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4419475	0.83[ASN][1000 genomes]
rs4699837	0.81[EUR][1000 genomes]
rs59785524	0.83[ASN][1000 genomes]
rs62319060	0.88[ASN][1000 genomes]
rs7661876	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7676599	0.82[ASN][1000 genomes]
rs7693043	0.81[ASN][1000 genomes]
rs9307155	0.88[ASN][1000 genomes]
rs995062	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
2	chr4:96126000-96137000	Weak transcription	Ovary	ovary
3	chr4:96133400-96135800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr4:96133800-96136200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:96133800-96136800	Enhancers	Brain Substantia Nigra	brain
6	chr4:96134200-96136600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:96134200-96136800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr4:96134400-96136600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:96134400-96142600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:96134600-96135800	Enhancers	Fetal Lung	lung
11	chr4:96134600-96138200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:96134600-96138600	Enhancers	K562	blood
13	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
14	chr4:96134800-96137000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:96134800-96137600	Enhancers	Brain Germinal Matrix	brain
16	chr4:96134800-96137800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:96134800-96138000	Weak transcription	Aorta	Aorta
18	chr4:96134800-96140200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:96134800-96147000	Weak transcription	Brain Anterior Caudate	brain
20	chr4:96135000-96135800	Enhancers	Brain Angular Gyrus	brain
21	chr4:96135000-96135800	Enhancers	Brain Cingulate Gyrus	brain
22	chr4:96135000-96135800	Enhancers	Brain Hippocampus Middle	brain
23	chr4:96135000-96136400	Weak transcription	Fetal Brain Male	brain
24	chr4:96135000-96137000	Weak transcription	HSMMtube	muscle
25	chr4:96135200-96146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr4:96135400-96136000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr4:96135400-96138400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:96135600-96136800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:96135600-96153600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links