Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10856911	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11944846	0.80[CEU][hapmap]
rs12513212	0.98[ASN][1000 genomes]
rs13118653	0.85[CEU][hapmap]
rs1434534	0.92[CEU][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2571037	0.92[CEU][hapmap];0.92[ASN][1000 genomes]
rs2571038	0.88[CEU][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2621449	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2621450	0.92[CEU][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2865384	0.80[CEU][hapmap];0.94[ASN][1000 genomes]
rs34656389	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36137963	0.83[ASN][1000 genomes]
rs3775051	0.88[CEU][hapmap]
rs4419475	0.95[ASN][1000 genomes]
rs4699414	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4699415	0.85[CEU][hapmap]
rs4699837	0.84[CEU][hapmap]
rs59785524	0.95[ASN][1000 genomes]
rs62319060	0.99[ASN][1000 genomes]
rs6846193	0.82[CEU][hapmap]
rs7661876	0.99[ASN][1000 genomes]
rs7676599	0.92[ASN][1000 genomes]
rs995062	0.84[CEU][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
2	chr4:96135600-96153600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:96140600-96152600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:96140600-96163400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:96141400-96153800	Weak transcription	Fetal Lung	lung
6	chr4:96141600-96163200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:96142600-96157800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:96143000-96153600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:96143200-96153000	Weak transcription	Fetal Kidney	kidney
10	chr4:96147800-96163600	Weak transcription	Aorta	Aorta
11	chr4:96148000-96152800	Weak transcription	Brain Anterior Caudate	brain
12	chr4:96148200-96153600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:96150200-96154000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:96151800-96153400	Enhancers	Brain Substantia Nigra	brain
15	chr4:96151800-96154200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:96151800-96154200	Enhancers	Brain Cingulate Gyrus	brain
17	chr4:96152200-96152400	Enhancers	Brain Angular Gyrus	brain
18	chr4:96152200-96153400	Enhancers	Brain Hippocampus Middle	brain
19	chr4:96152200-96153600	Enhancers	Brain Inferior Temporal Lobe	brain

Quick Search: