Variant report

Variant	rs13118653
Chromosome Location	chr4:96169733-96169734
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96169064..96170842-chr4:96173407..96175088,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10856911	0.93[EUR][1000 genomes]
rs11730446	0.83[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs11737434	0.86[CHB][hapmap]
rs12513212	0.85[CEU][hapmap]
rs12642020	0.80[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs13119920	0.93[ASN][1000 genomes]
rs1434534	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs17023311	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2571037	0.84[CEU][hapmap]
rs2571038	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2621449	0.81[EUR][1000 genomes]
rs2621450	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2865383	0.85[CEU][hapmap]
rs2865414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2865415	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs35779969	0.91[ASN][1000 genomes]
rs35780120	0.91[ASN][1000 genomes]
rs36040316	0.81[ASN][1000 genomes]
rs3733210	0.85[ASN][1000 genomes]
rs3775002	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs3775051	0.88[CEU][hapmap]
rs3775053	0.91[CHB][hapmap]
rs4419475	0.83[EUR][1000 genomes]
rs4699412	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4699413	1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4699414	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs4699415	0.84[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes]
rs4699836	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4699837	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6846193	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs7434638	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7439701	1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs7440613	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs7676599	0.80[CEU][hapmap]
rs9637615	0.84[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs995062	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
2	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney
3	chr4:96154600-96172000	Weak transcription	Brain Substantia Nigra	brain
4	chr4:96154600-96176800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:96162000-96176800	Weak transcription	Brain Anterior Caudate	brain
6	chr4:96163800-96177200	Weak transcription	Aorta	Aorta
7	chr4:96164000-96169800	Weak transcription	Fetal Lung	lung
8	chr4:96164000-96170000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:96164000-96170200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:96164000-96171200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:96164000-96177000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:96164200-96170000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:96166400-96172400	Weak transcription	Spleen	Spleen
14	chr4:96166400-96177200	Weak transcription	Left Ventricle	heart
15	chr4:96168200-96170800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:96168600-96169800	Enhancers	Brain Hippocampus Middle	brain
17	chr4:96168800-96170400	Enhancers	K562	blood
18	chr4:96169400-96171200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:96169400-96171800	Weak transcription	Brain Angular Gyrus	brain
20	chr4:96169600-96171800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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