Variant report

Variant	rs4699836
Chromosome Location	chr4:96142818-96142819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11730446	0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs11737434	0.86[CHB][hapmap]
rs12108433	0.82[EUR][1000 genomes]
rs12642020	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13118653	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs13119920	0.88[ASN][1000 genomes]
rs17023311	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1865378	1.00[CEU][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2276322	0.91[CEU][hapmap]
rs2621451	0.87[CEU][hapmap]
rs2865414	1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2865415	0.84[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap]
rs35779969	0.88[ASN][1000 genomes]
rs35780120	0.88[ASN][1000 genomes]
rs36040316	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3733212	0.82[CEU][hapmap]
rs3775002	0.91[CHB][hapmap]
rs3775043	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs3775046	0.82[CEU][hapmap]
rs3775048	0.83[CEU][hapmap]
rs3775050	0.81[ASN][1000 genomes]
rs3775053	0.86[CEU][hapmap];0.91[CHB][hapmap]
rs4699412	0.91[CHB][hapmap]
rs4699413	1.00[CHB][hapmap];0.96[JPT][hapmap];0.92[ASN][1000 genomes]
rs4699414	1.00[CHB][hapmap];0.96[JPT][hapmap];0.92[ASN][1000 genomes]
rs4699415	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4699837	1.00[CHB][hapmap]
rs62319064	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6846193	0.83[CHB][hapmap]
rs7434638	0.91[CHB][hapmap]
rs7439701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7440613	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7676599	0.87[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs9637615	0.83[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
2	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
3	chr4:96134800-96147000	Weak transcription	Brain Anterior Caudate	brain
4	chr4:96135200-96146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:96135600-96153600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:96137200-96145000	Weak transcription	Fetal Brain Male	brain
7	chr4:96137600-96143000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:96138200-96147800	Weak transcription	Ovary	ovary
9	chr4:96140600-96152600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:96140600-96163400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:96140800-96144600	Weak transcription	Brain Angular Gyrus	brain
12	chr4:96141000-96143400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:96141200-96143200	Enhancers	Brain Substantia Nigra	brain
14	chr4:96141200-96147000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:96141400-96153800	Weak transcription	Fetal Lung	lung
16	chr4:96141600-96145600	Enhancers	Brain Hippocampus Middle	brain
17	chr4:96141600-96163200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:96141800-96143600	Enhancers	Brain Cingulate Gyrus	brain
19	chr4:96142000-96143000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr4:96142600-96157800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:96142800-96145000	Weak transcription	Brain Inferior Temporal Lobe	brain

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