Variant report

Variant	rs34656389
Chromosome Location	chr4:96153214-96153215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96152436..96154140-chr4:96173614..96175189,2	K562	blood:
2	chr4:96153204..96155731-chr4:96157374..96159484,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10856911	0.91[ASN][1000 genomes]
rs12513212	0.93[ASN][1000 genomes]
rs1434534	0.83[ASN][1000 genomes]
rs2571037	0.87[ASN][1000 genomes]
rs2571038	0.83[ASN][1000 genomes]
rs2621449	0.83[ASN][1000 genomes]
rs2621450	0.83[ASN][1000 genomes]
rs2865383	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2865384	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35779969	0.80[EUR][1000 genomes]
rs35780120	0.80[EUR][1000 genomes]
rs4419475	0.91[ASN][1000 genomes]
rs4699414	0.81[EUR][1000 genomes]
rs59785524	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319060	0.94[ASN][1000 genomes]
rs7442335	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7661876	0.94[ASN][1000 genomes]
rs7676599	0.97[ASN][1000 genomes]
rs995062	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
2	chr4:96135600-96153600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:96140600-96163400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:96141400-96153800	Weak transcription	Fetal Lung	lung
5	chr4:96141600-96163200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:96142600-96157800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:96143000-96153600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:96147800-96163600	Weak transcription	Aorta	Aorta
9	chr4:96148200-96153600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:96150200-96154000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:96151800-96153400	Enhancers	Brain Substantia Nigra	brain
12	chr4:96151800-96154200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:96151800-96154200	Enhancers	Brain Cingulate Gyrus	brain
14	chr4:96152200-96153400	Enhancers	Brain Hippocampus Middle	brain
15	chr4:96152200-96153600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr4:96152600-96154400	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr4:96152600-96154400	Enhancers	K562	blood
18	chr4:96152800-96153600	Enhancers	Brain Anterior Caudate	brain
19	chr4:96153000-96153600	Enhancers	Brain Angular Gyrus	brain
20	chr4:96153000-96153800	Enhancers	Stomach Mucosa	stomach
21	chr4:96153000-96154600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:96153000-96154600	Enhancers	Dnd41	blood
23	chr4:96153000-96155000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney

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