Variant report

Variant	rs35351957
Chromosome Location	chr4:96172338-96172339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96170637..96175521-chr4:96175696..96180371,8	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12642020	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2571037	0.86[EUR][1000 genomes]
rs2865415	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35779969	0.83[ASN][1000 genomes]
rs35780120	0.83[ASN][1000 genomes]
rs3775002	0.82[ASN][1000 genomes]
rs4699413	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4699414	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4699415	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60308122	0.84[ASN][1000 genomes]
rs6846193	0.86[EUR][1000 genomes]
rs7439701	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
2	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney
3	chr4:96154600-96176800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:96162000-96176800	Weak transcription	Brain Anterior Caudate	brain
5	chr4:96163800-96177200	Weak transcription	Aorta	Aorta
6	chr4:96164000-96177000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:96166400-96172400	Weak transcription	Spleen	Spleen
8	chr4:96166400-96177200	Weak transcription	Left Ventricle	heart
9	chr4:96170600-96172600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:96171200-96176800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:96171400-96172400	Enhancers	K562	blood
12	chr4:96171400-96184600	Weak transcription	Fetal Lung	lung
13	chr4:96171600-96172400	Enhancers	HMEC	breast
14	chr4:96171600-96172600	Enhancers	Liver	Liver
15	chr4:96171600-96173000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr4:96171600-96181600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:96171800-96187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:96172000-96172600	Enhancers	Brain Cingulate Gyrus	brain
19	chr4:96172000-96173000	Enhancers	Brain Substantia Nigra	brain
20	chr4:96172000-96177800	Enhancers	Brain Hippocampus Middle	brain
21	chr4:96172200-96176600	Weak transcription	Brain Angular Gyrus	brain
22	chr4:96172200-96177000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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