Variant report

Variant	rs1866057
Chromosome Location	chr15:60126120-60126121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1036514	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10468018	0.81[ASN][1000 genomes]
rs10851665	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11071480	0.81[ASN][1000 genomes]
rs11071488	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11071489	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11630357	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11632455	0.99[ASN][1000 genomes]
rs11633326	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11633484	0.90[ASN][1000 genomes]
rs11635283	0.82[ASN][1000 genomes]
rs11636295	0.83[ASN][1000 genomes]
rs12593427	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12595753	0.89[ASN][1000 genomes]
rs1437475	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1437476	0.90[ASN][1000 genomes]
rs1437477	0.90[ASN][1000 genomes]
rs1437478	0.90[ASN][1000 genomes]
rs1437479	0.90[ASN][1000 genomes]
rs1437482	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1561249	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1866056	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898447	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2083065	0.81[ASN][1000 genomes]
rs2083066	0.81[ASN][1000 genomes]
rs2414647	0.89[ASN][1000 genomes]
rs2414648	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28499099	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28665953	0.89[ASN][1000 genomes]
rs2917823	0.85[ASN][1000 genomes]
rs2917824	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2917826	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2917827	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2960787	0.89[ASN][1000 genomes]
rs2960788	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2960800	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2960813	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2960814	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2965329	0.90[ASN][1000 genomes]
rs2965331	0.90[ASN][1000 genomes]
rs2965333	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2965334	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2965335	0.97[ASN][1000 genomes]
rs2970366	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2970367	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2970368	0.89[ASN][1000 genomes]
rs2970374	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2970375	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34835177	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35380618	0.85[ASN][1000 genomes]
rs4080182	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4774343	0.80[EUR][1000 genomes]
rs4775211	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4775212	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4775213	0.81[ASN][1000 genomes]
rs4995778	0.82[EUR][1000 genomes]
rs55887443	0.91[AFR][1000 genomes]
rs60653843	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6494147	0.84[ASN][1000 genomes]
rs6494148	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7162699	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7163595	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7165175	0.88[ASN][1000 genomes]
rs7166798	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7167046	0.93[ASN][1000 genomes]
rs7169841	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7173468	0.81[ASN][1000 genomes]
rs7174331	0.81[ASN][1000 genomes]
rs7174483	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7176324	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7179349	0.83[ASN][1000 genomes]
rs7181522	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7182438	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7182646	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7182978	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7183185	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8027629	0.90[AFR][1000 genomes]
rs8030694	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8031153	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8031998	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60123000-60127800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr15:60124000-60127000	Enhancers	Brain Germinal Matrix	brain
3	chr15:60125600-60128800	Enhancers	Fetal Thymus	thymus
4	chr15:60125600-60130400	Enhancers	Thymus	Thymus
5	chr15:60126000-60133200	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links