Variant report
| Variant | rs2917823 |
|---|---|
| Chromosome Location | chr15:60124671-60124672 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs1036514 | 0.82[ASN][1000 genomes] |
| rs10468018 | 0.90[AFR][1000 genomes] |
| rs10851665 | 0.95[AFR][1000 genomes] |
| rs11632455 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11633484 | 0.84[EUR][1000 genomes] |
| rs12594880 | 0.81[EUR][1000 genomes] |
| rs12595753 | 0.92[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1437475 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1437487 | 0.86[CEU][hapmap] |
| rs1866056 | 0.85[ASN][1000 genomes] |
| rs1866057 | 0.85[ASN][1000 genomes] |
| rs1898447 | 0.85[ASN][1000 genomes] |
| rs2008741 | 0.94[CEU][hapmap] |
| rs2414647 | 0.81[EUR][1000 genomes] |
| rs28499099 | 0.95[AFR][1000 genomes] |
| rs28665953 | 0.80[ASN][1000 genomes] |
| rs2965331 | 0.84[EUR][1000 genomes] |
| rs2965334 | 0.88[AFR][1000 genomes] |
| rs2965335 | 0.94[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs34835177 | 0.80[ASN][1000 genomes] |
| rs35380618 | 0.85[EUR][1000 genomes] |
| rs4080182 | 0.97[AFR][1000 genomes] |
| rs4775205 | 0.81[CEU][hapmap] |
| rs4775211 | 0.95[AFR][1000 genomes] |
| rs60653843 | 0.90[AFR][1000 genomes] |
| rs6494148 | 0.83[ASN][1000 genomes] |
| rs7162699 | 0.84[ASN][1000 genomes] |
| rs7163595 | 0.84[ASN][1000 genomes] |
| rs7163623 | 0.81[CEU][hapmap] |
| rs7166798 | 0.92[AFR][1000 genomes] |
| rs7167046 | 0.84[ASN][1000 genomes] |
| rs7174483 | 0.88[ASN][1000 genomes] |
| rs7182438 | 0.84[EUR][1000 genomes] |
| rs7182646 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs8030694 | 0.84[ASN][1000 genomes] |
| rs8031153 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs8031998 | 0.85[ASN][1000 genomes] |
| rs965353 | 0.87[CEU][hapmap] |
| rs965355 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:60123000-60127800 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 2 | chr15:60124000-60125600 | Weak transcription | Thymus | Thymus |
| 3 | chr15:60124000-60127000 | Enhancers | Brain Germinal Matrix | brain |
