Variant report
| Variant | rs965353 |
|---|---|
| Chromosome Location | chr15:60060206-60060207 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs1437472 | 0.81[EUR][1000 genomes] |
| rs1437487 | 1.00[CEU][hapmap] |
| rs16941757 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2008741 | 0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs2414645 | 0.83[CEU][hapmap] |
| rs28593065 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4620904 | 0.81[MEX][hapmap] |
| rs4775202 | 0.85[EUR][1000 genomes] |
| rs4775205 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap] |
| rs4775210 | 0.83[EUR][1000 genomes] |
| rs7163623 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8032951 | 0.83[CEU][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs965355 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
| rs9673028 | 0.85[EUR][1000 genomes] |
| rs9972499 | 0.85[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9972503 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv977722 | chr15:60059391-60063331 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
