Variant report

Variant	rs2414645
Chromosome Location	chr15:60056517-60056518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11071476	0.85[EUR][1000 genomes]
rs11635056	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1437472	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1437487	0.82[CEU][hapmap]
rs1479882	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16941757	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28593065	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4775202	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4775205	0.83[CEU][hapmap]
rs6494144	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7163623	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8032951	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs965353	0.83[CEU][hapmap]
rs965355	0.83[CEU][hapmap]
rs9673028	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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