Variant report

Variant	rs6494144
Chromosome Location	chr15:60030904-60030905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11071476	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11635056	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1437472	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1437487	0.82[CEU][hapmap]
rs1479882	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2414645	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs28593065	0.90[EUR][1000 genomes]
rs4775201	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4775202	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4775205	0.83[CEU][hapmap]
rs7163623	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs8032951	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes]
rs965353	0.83[CEU][hapmap]
rs965355	0.83[CEU][hapmap]
rs9673028	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984219	chr15:60026752-60043941	Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60030000-60034400	Enhancers	Liver	Liver
2	chr15:60030600-60033400	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links