Variant report
| Variant | rs8032951 |
|---|---|
| Chromosome Location | chr15:60056740-60056741 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| RPS3AP6 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11071476 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11635056 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1437472 | 0.85[EUR][1000 genomes] |
| rs1437487 | 0.80[CEU][hapmap] |
| rs1479882 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16941757 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2008741 | 0.81[JPT][hapmap] |
| rs2414645 | 1.00[CEU][hapmap] |
| rs28593065 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4620904 | 0.87[MEX][hapmap] |
| rs4775202 | 0.90[EUR][1000 genomes] |
| rs4775205 | 0.83[CEU][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap] |
| rs6494144 | 0.84[EUR][1000 genomes] |
| rs7163623 | 0.83[CEU][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs965353 | 0.83[CEU][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap] |
| rs965355 | 0.83[CEU][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap] |
| rs9673028 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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