Variant report

Variant	rs2008741
Chromosome Location	chr15:60061435-60061436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12594880	0.83[EUR][1000 genomes]
rs12595753	0.81[EUR][1000 genomes]
rs1437487	0.93[CEU][hapmap]
rs2965331	0.81[EUR][1000 genomes]
rs35380618	0.81[EUR][1000 genomes]
rs4775205	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7163623	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8032951	0.81[JPT][hapmap]
rs965353	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs965355	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv977722	chr15:60059391-60063331	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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