Variant report

Variant	rs4775202
Chromosome Location	chr15:60044476-60044477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11071476	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11635056	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1437472	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1479882	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16941757	0.85[EUR][1000 genomes]
rs28593065	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6494144	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7163623	0.86[EUR][1000 genomes]
rs8032951	0.90[EUR][1000 genomes]
rs9673028	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60043800-60044600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr15:60044000-60044600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:60044000-60045000	Enhancers	Thymus	Thymus
4	chr15:60044200-60044600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr15:60044200-60044600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:60044200-60044600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr15:60044200-60044600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr15:60044200-60044600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr15:60044200-60044600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:60044200-60044600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr15:60044200-60044600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr15:60044200-60044800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr15:60044200-60045000	Enhancers	Primary T cells from cord blood	blood
14	chr15:60044200-60045000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:60044200-60045000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr15:60044400-60044600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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