Variant report

Variant	rs9972503
Chromosome Location	chr15:60066067-60066068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10468018	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10851665	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11071479	0.87[ASN][1000 genomes]
rs11071480	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11630357	0.85[EUR][1000 genomes]
rs11633326	0.84[EUR][1000 genomes]
rs11635283	0.84[ASN][1000 genomes]
rs11636295	0.85[ASN][1000 genomes]
rs12593427	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12594880	0.89[ASN][1000 genomes]
rs12898608	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12915893	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1437476	0.81[EUR][1000 genomes]
rs1437477	0.81[EUR][1000 genomes]
rs1437478	0.81[EUR][1000 genomes]
rs1437479	0.81[EUR][1000 genomes]
rs1561249	0.89[EUR][1000 genomes]
rs16941757	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16953426	0.88[ASN][1000 genomes]
rs17302720	0.91[EUR][1000 genomes]
rs17302727	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1866052	0.88[ASN][1000 genomes]
rs1866053	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2008741	0.81[CHB][hapmap]
rs2083065	0.85[ASN][1000 genomes]
rs2083066	0.85[ASN][1000 genomes]
rs2196607	0.87[ASN][1000 genomes]
rs2414648	0.81[EUR][1000 genomes]
rs28499099	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2917824	0.87[EUR][1000 genomes]
rs2917826	0.88[EUR][1000 genomes]
rs2917827	0.88[EUR][1000 genomes]
rs2960788	0.87[EUR][1000 genomes]
rs2960800	0.88[EUR][1000 genomes]
rs2960813	0.87[EUR][1000 genomes]
rs2960814	0.87[EUR][1000 genomes]
rs2965329	0.81[EUR][1000 genomes]
rs2965333	0.88[EUR][1000 genomes]
rs2965334	0.87[EUR][1000 genomes]
rs2970366	0.87[EUR][1000 genomes]
rs2970367	0.88[EUR][1000 genomes]
rs2970374	0.88[EUR][1000 genomes]
rs2970375	0.88[EUR][1000 genomes]
rs35275482	0.92[EUR][1000 genomes]
rs4080182	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4620904	0.80[MEX][hapmap]
rs4774343	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4774344	0.87[ASN][1000 genomes]
rs4775205	0.82[CHB][hapmap];0.88[MEX][hapmap]
rs4775210	0.95[ASN][1000 genomes]
rs4775211	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4775212	0.87[EUR][1000 genomes]
rs4995778	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55752605	0.83[ASN][1000 genomes]
rs55887443	0.87[ASN][1000 genomes]
rs60653843	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6494146	0.89[ASN][1000 genomes]
rs6494147	0.85[ASN][1000 genomes]
rs7163623	0.88[MEX][hapmap];0.85[AMR][1000 genomes]
rs7166798	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7169841	0.84[EUR][1000 genomes]
rs7173468	0.84[ASN][1000 genomes]
rs7173653	0.86[ASN][1000 genomes]
rs7174331	0.84[ASN][1000 genomes]
rs7176324	0.84[EUR][1000 genomes]
rs7177418	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7179349	0.82[ASN][1000 genomes]
rs7181522	0.84[EUR][1000 genomes]
rs7182978	0.84[EUR][1000 genomes]
rs7183185	0.84[EUR][1000 genomes]
rs8027629	0.89[ASN][1000 genomes]
rs8032951	0.94[MEX][hapmap]
rs965353	0.81[CHB][hapmap];0.87[MEX][hapmap]
rs965355	0.82[CHB][hapmap];0.88[MEX][hapmap]
rs9972499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60064600-60066400	Enhancers	Primary T cells from cord blood	blood

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