Variant report

Variant	rs35275482
Chromosome Location	chr15:60082898-60082899
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10468018	0.87[EUR][1000 genomes]
rs10851665	0.94[EUR][1000 genomes]
rs11071480	0.87[EUR][1000 genomes]
rs11630357	0.91[EUR][1000 genomes]
rs11633326	0.90[EUR][1000 genomes]
rs12593427	0.95[EUR][1000 genomes]
rs12594880	0.81[EUR][1000 genomes]
rs12898608	0.98[EUR][1000 genomes]
rs12915893	0.88[EUR][1000 genomes]
rs1437476	0.86[EUR][1000 genomes]
rs1437477	0.86[EUR][1000 genomes]
rs1437478	0.86[EUR][1000 genomes]
rs1437479	0.86[EUR][1000 genomes]
rs1561249	0.95[EUR][1000 genomes]
rs17302720	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17302727	0.87[EUR][1000 genomes]
rs2414648	0.89[EUR][1000 genomes]
rs28499099	0.95[EUR][1000 genomes]
rs2917824	0.93[EUR][1000 genomes]
rs2917826	0.94[EUR][1000 genomes]
rs2917827	0.94[EUR][1000 genomes]
rs2960788	0.93[EUR][1000 genomes]
rs2960800	0.94[EUR][1000 genomes]
rs2960813	0.93[EUR][1000 genomes]
rs2960814	0.93[EUR][1000 genomes]
rs2965329	0.86[EUR][1000 genomes]
rs2965333	0.94[EUR][1000 genomes]
rs2965334	0.93[EUR][1000 genomes]
rs2965335	0.85[EUR][1000 genomes]
rs2970366	0.93[EUR][1000 genomes]
rs2970367	0.92[EUR][1000 genomes]
rs2970374	0.94[EUR][1000 genomes]
rs2970375	0.94[EUR][1000 genomes]
rs4080182	0.95[EUR][1000 genomes]
rs4774343	0.95[EUR][1000 genomes]
rs4775211	0.94[EUR][1000 genomes]
rs4775212	0.93[EUR][1000 genomes]
rs4775213	0.84[EUR][1000 genomes]
rs4995778	0.94[EUR][1000 genomes]
rs60653843	0.94[EUR][1000 genomes]
rs6494147	0.85[EUR][1000 genomes]
rs7166798	0.95[EUR][1000 genomes]
rs7169841	0.90[EUR][1000 genomes]
rs7176324	0.90[EUR][1000 genomes]
rs7177418	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7181522	0.90[EUR][1000 genomes]
rs7182978	0.90[EUR][1000 genomes]
rs7183185	0.90[EUR][1000 genomes]
rs9972499	0.92[EUR][1000 genomes]
rs9972503	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60080600-60083200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:60080800-60083200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:60080800-60083800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:60081000-60083000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:60081200-60083000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:60081200-60083600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:60081400-60083000	Weak transcription	Thymus	Thymus
8	chr15:60081400-60083200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:60081400-60083200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr15:60081400-60083200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:60081400-60083400	Weak transcription	Primary T cells from cord blood	blood
12	chr15:60081600-60083200	Weak transcription	Fetal Thymus	thymus
13	chr15:60082000-60083000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:60082800-60084400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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