Variant report

Variant	rs12898608
Chromosome Location	chr15:60076312-60076313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10468018	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10851665	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11071479	0.89[ASN][1000 genomes]
rs11071480	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11630357	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11633326	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11633484	0.81[ASN][1000 genomes]
rs11635283	0.86[ASN][1000 genomes]
rs11636295	0.87[ASN][1000 genomes]
rs12593427	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12594880	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12595753	0.81[ASN][1000 genomes]
rs12915893	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1437476	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1437477	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1437478	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1437479	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1561249	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16941757	0.94[ASN][1000 genomes]
rs16953426	0.90[ASN][1000 genomes]
rs17302720	0.96[EUR][1000 genomes]
rs17302727	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866052	0.90[ASN][1000 genomes]
rs1866053	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2083065	0.87[ASN][1000 genomes]
rs2083066	0.87[ASN][1000 genomes]
rs2196607	0.89[ASN][1000 genomes]
rs2414647	0.81[ASN][1000 genomes]
rs2414648	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28499099	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2917824	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2917826	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2917827	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2960787	0.80[ASN][1000 genomes]
rs2960788	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2960800	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2960813	0.91[EUR][1000 genomes]
rs2960814	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2965329	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2965331	0.81[ASN][1000 genomes]
rs2965333	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2965334	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2965335	0.83[EUR][1000 genomes]
rs2970366	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2970367	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2970368	0.80[ASN][1000 genomes]
rs2970374	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2970375	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35275482	0.98[EUR][1000 genomes]
rs4080182	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4774343	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4774344	0.89[ASN][1000 genomes]
rs4775210	0.94[ASN][1000 genomes]
rs4775211	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4775212	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4775213	0.82[EUR][1000 genomes]
rs4995778	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55752605	0.85[ASN][1000 genomes]
rs55887443	0.89[ASN][1000 genomes]
rs60653843	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6494146	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6494147	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7165175	0.81[ASN][1000 genomes]
rs7166798	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7169841	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7173468	0.86[ASN][1000 genomes]
rs7173653	0.84[ASN][1000 genomes]
rs7174331	0.86[ASN][1000 genomes]
rs7176324	0.88[EUR][1000 genomes]
rs7177418	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7179349	0.84[ASN][1000 genomes]
rs7181522	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7182438	0.81[ASN][1000 genomes]
rs7182978	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7183185	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8027629	0.91[ASN][1000 genomes]
rs9972499	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9972503	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60075600-60076600	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr15:60075600-60076800	Enhancers	Liver	Liver
3	chr15:60075600-60076800	Enhancers	HepG2	liver
4	chr15:60075800-60076800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:60075800-60077000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:60075800-60077000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr15:60075800-60077800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr15:60076000-60076400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:60076000-60077000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:60076000-60077000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:60076000-60077000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:60076000-60077000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:60076000-60077400	Enhancers	Primary T cells from cord blood	blood
14	chr15:60076000-60077400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:60076200-60076800	Enhancers	Fetal Thymus	thymus
16	chr15:60076200-60077000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr15:60076200-60077000	Enhancers	Thymus	Thymus

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