Variant report

Variant	rs6494146
Chromosome Location	chr15:60084653-60084654
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60063435..60065226-chr15:60084300..60086529,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1036514	0.81[ASN][1000 genomes]
rs10468018	0.95[ASN][1000 genomes]
rs10851665	0.92[ASN][1000 genomes]
rs11071479	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11071480	0.95[ASN][1000 genomes]
rs11071488	0.82[ASN][1000 genomes]
rs11071489	0.83[ASN][1000 genomes]
rs11630357	0.85[ASN][1000 genomes]
rs11633326	0.85[ASN][1000 genomes]
rs11633484	0.85[ASN][1000 genomes]
rs11635283	0.91[ASN][1000 genomes]
rs11636295	0.91[ASN][1000 genomes]
rs12593427	0.95[ASN][1000 genomes]
rs12594880	0.96[ASN][1000 genomes]
rs12595753	0.86[ASN][1000 genomes]
rs12898608	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12915893	0.96[ASN][1000 genomes]
rs1437476	0.85[ASN][1000 genomes]
rs1437477	0.85[ASN][1000 genomes]
rs1437478	0.85[ASN][1000 genomes]
rs1437479	0.85[ASN][1000 genomes]
rs1437482	0.83[ASN][1000 genomes]
rs1561249	0.85[ASN][1000 genomes]
rs16941757	0.89[ASN][1000 genomes]
rs16953426	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17302727	0.96[ASN][1000 genomes]
rs1866052	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1866053	0.88[ASN][1000 genomes]
rs2083065	0.91[ASN][1000 genomes]
rs2083066	0.91[ASN][1000 genomes]
rs2196607	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2414647	0.86[ASN][1000 genomes]
rs2414648	0.86[ASN][1000 genomes]
rs28499099	0.95[ASN][1000 genomes]
rs28665953	0.83[ASN][1000 genomes]
rs2917824	0.85[ASN][1000 genomes]
rs2917826	0.85[ASN][1000 genomes]
rs2917827	0.85[ASN][1000 genomes]
rs2960787	0.85[ASN][1000 genomes]
rs2960788	0.85[ASN][1000 genomes]
rs2960800	0.85[ASN][1000 genomes]
rs2960813	0.85[ASN][1000 genomes]
rs2960814	0.85[ASN][1000 genomes]
rs2965329	0.85[ASN][1000 genomes]
rs2965331	0.85[ASN][1000 genomes]
rs2965333	0.85[ASN][1000 genomes]
rs2965334	0.85[ASN][1000 genomes]
rs2970366	0.85[ASN][1000 genomes]
rs2970367	0.85[ASN][1000 genomes]
rs2970368	0.85[ASN][1000 genomes]
rs2970374	0.85[ASN][1000 genomes]
rs2970375	0.85[ASN][1000 genomes]
rs34835177	0.83[ASN][1000 genomes]
rs4080182	0.96[ASN][1000 genomes]
rs4774343	0.94[ASN][1000 genomes]
rs4774344	0.94[ASN][1000 genomes]
rs4775210	0.94[ASN][1000 genomes]
rs4775211	0.92[ASN][1000 genomes]
rs4775212	0.85[ASN][1000 genomes]
rs4995778	0.96[ASN][1000 genomes]
rs55752605	0.90[ASN][1000 genomes]
rs55887443	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60653843	0.91[ASN][1000 genomes]
rs6494147	0.91[ASN][1000 genomes]
rs7165175	0.86[ASN][1000 genomes]
rs7166798	0.93[ASN][1000 genomes]
rs7169841	0.85[ASN][1000 genomes]
rs7173468	0.91[ASN][1000 genomes]
rs7173653	0.89[ASN][1000 genomes]
rs7174331	0.91[ASN][1000 genomes]
rs7176324	0.84[ASN][1000 genomes]
rs7177418	0.92[ASN][1000 genomes]
rs7179349	0.89[ASN][1000 genomes]
rs7181522	0.85[ASN][1000 genomes]
rs7182438	0.85[ASN][1000 genomes]
rs7182978	0.85[ASN][1000 genomes]
rs7183185	0.85[ASN][1000 genomes]
rs8027629	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9972499	0.88[ASN][1000 genomes]
rs9972503	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60083000-60091600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:60083200-60087600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr15:60083600-60085000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr15:60083600-60087200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:60083800-60085200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:60083800-60087000	Enhancers	Thymus	Thymus
7	chr15:60084200-60085000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr15:60084200-60085000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr15:60084400-60084800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr15:60084400-60084800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:60084400-60084800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr15:60084400-60085000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:60084400-60085000	Flanking Bivalent TSS/Enh	Dnd41	blood
14	chr15:60084600-60084800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:60084600-60085000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr15:60084600-60085000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:60084600-60085000	Active TSS	Duodenum Mucosa	Duodenum
18	chr15:60084600-60085200	Enhancers	Fetal Thymus	thymus
19	chr15:60084600-60086200	Enhancers	Primary T cells from cord blood	blood
20	chr15:60084600-60086400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:60084600-60087400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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