Variant report

Variant	rs11071489
Chromosome Location	chr15:60120689-60120690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1036514	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10468018	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10851665	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11071479	0.87[ASN][1000 genomes]
rs11071480	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11071488	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11630357	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11632455	0.88[ASN][1000 genomes]
rs11633326	0.98[ASN][1000 genomes]
rs11633484	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11635283	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11636295	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12593427	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12594880	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12595753	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12915893	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1437475	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1437476	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1437477	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1437478	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1437479	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1437482	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1437487	0.85[CEU][hapmap]
rs1561249	0.98[ASN][1000 genomes]
rs16953426	0.87[ASN][1000 genomes]
rs17302727	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1866052	0.83[ASN][1000 genomes]
rs1866056	0.89[ASN][1000 genomes]
rs1866057	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1898447	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2008741	0.93[CEU][hapmap];0.81[CHB][hapmap]
rs2083065	0.89[ASN][1000 genomes]
rs2083066	0.89[ASN][1000 genomes]
rs2196607	0.83[ASN][1000 genomes]
rs2414647	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2414648	0.96[ASN][1000 genomes]
rs28499099	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28665953	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2917824	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2917826	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2917827	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2960787	0.97[ASN][1000 genomes]
rs2960788	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2960791	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2960800	0.98[ASN][1000 genomes]
rs2960813	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2960814	0.98[ASN][1000 genomes]
rs2965329	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2965331	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2965333	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2965334	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2965335	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2970365	0.92[EUR][1000 genomes]
rs2970366	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2970367	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2970368	0.97[ASN][1000 genomes]
rs2970374	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2970375	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34835177	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35380618	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4080182	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4774343	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4774344	0.87[ASN][1000 genomes]
rs4775205	0.81[CEU][hapmap];0.82[CHB][hapmap];0.82[MEX][hapmap]
rs4775210	0.80[ASN][1000 genomes]
rs4775211	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4775212	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4775213	0.88[ASN][1000 genomes]
rs4995778	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55752605	0.87[ASN][1000 genomes]
rs55887443	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs60653843	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6494146	0.83[ASN][1000 genomes]
rs6494147	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6494148	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7162699	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163595	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163623	0.81[CEU][hapmap];0.82[MEX][hapmap]
rs7165175	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7166798	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7167046	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7169841	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7173468	0.88[ASN][1000 genomes]
rs7173653	0.86[ASN][1000 genomes]
rs7174331	0.88[ASN][1000 genomes]
rs7174483	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7176324	0.96[ASN][1000 genomes]
rs7177418	0.80[ASN][1000 genomes]
rs7179349	0.86[ASN][1000 genomes]
rs7181522	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7182438	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7182646	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7182978	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7183185	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8027629	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs8030694	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs8031153	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8031998	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8032951	0.88[MEX][hapmap]
rs965353	0.80[CEU][hapmap];0.81[CHB][hapmap];0.81[MEX][hapmap]
rs965355	0.81[CEU][hapmap];0.82[CHB][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11071489	TREML1	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60118000-60124200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:60118200-60120800	Enhancers	Hela-S3	cervix
3	chr15:60119400-60124200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:60119600-60121000	Weak transcription	Placenta	Placenta
5	chr15:60119600-60122400	Weak transcription	Thymus	Thymus
6	chr15:60120200-60120800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:60120400-60121400	Flanking Active TSS	NHEK	skin
8	chr15:60120600-60120800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:60120600-60121000	Enhancers	Fetal Heart	heart
10	chr15:60120600-60121200	Enhancers	HMEC	breast

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