Variant report

Variant	rs2970365
Chromosome Location	chr15:60128040-60128041
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1036514	0.92[EUR][1000 genomes]
rs11071488	0.93[EUR][1000 genomes]
rs11071489	0.92[EUR][1000 genomes]
rs11633484	0.85[EUR][1000 genomes]
rs11635283	0.82[EUR][1000 genomes]
rs11636295	0.81[EUR][1000 genomes]
rs12594880	0.83[EUR][1000 genomes]
rs12595753	0.85[EUR][1000 genomes]
rs1437475	0.85[EUR][1000 genomes]
rs1437482	0.90[EUR][1000 genomes]
rs1898447	0.93[EUR][1000 genomes]
rs2414647	0.82[EUR][1000 genomes]
rs28665953	0.92[EUR][1000 genomes]
rs2960791	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2965331	0.85[EUR][1000 genomes]
rs34835177	0.93[EUR][1000 genomes]
rs35380618	0.86[EUR][1000 genomes]
rs6494148	0.85[EUR][1000 genomes]
rs7162699	0.93[EUR][1000 genomes]
rs7163595	0.93[EUR][1000 genomes]
rs7165175	0.81[EUR][1000 genomes]
rs7167046	0.93[EUR][1000 genomes]
rs7174483	0.93[EUR][1000 genomes]
rs7182438	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60125600-60128800	Enhancers	Fetal Thymus	thymus
2	chr15:60125600-60130400	Enhancers	Thymus	Thymus
3	chr15:60126000-60133200	Enhancers	Primary T cells from cord blood	blood
4	chr15:60127600-60128200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr15:60127800-60128200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr15:60127800-60128400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr15:60128000-60128200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:60128000-60128400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr15:60128000-60129000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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