Variant report

Variant	rs2960791
Chromosome Location	chr15:60120360-60120361
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1036514	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11071488	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11071489	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11633484	0.88[EUR][1000 genomes]
rs11635283	0.85[EUR][1000 genomes]
rs11636295	0.84[EUR][1000 genomes]
rs12594880	0.86[EUR][1000 genomes]
rs12595753	0.89[EUR][1000 genomes]
rs1437475	0.88[EUR][1000 genomes]
rs1437476	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1437477	0.82[AMR][1000 genomes]
rs1437478	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1437479	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1437482	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1437487	0.84[CEU][hapmap]
rs17302720	0.85[AMR][1000 genomes]
rs17302727	0.82[AMR][1000 genomes]
rs1898447	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2008741	0.93[CEU][hapmap]
rs2414647	0.86[EUR][1000 genomes]
rs28665953	0.95[EUR][1000 genomes]
rs2960787	0.81[EUR][1000 genomes]
rs2965329	0.84[AMR][1000 genomes]
rs2965331	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2965335	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970365	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2970368	0.80[EUR][1000 genomes]
rs34835177	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35380618	0.90[EUR][1000 genomes]
rs4774344	0.81[EUR][1000 genomes]
rs4775205	0.80[CEU][hapmap]
rs6494148	0.82[EUR][1000 genomes]
rs7162699	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7163595	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7163623	0.80[CEU][hapmap]
rs7165175	0.84[EUR][1000 genomes]
rs7167046	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7174483	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7182438	0.88[EUR][1000 genomes]
rs965355	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60118000-60124200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:60118200-60120400	Enhancers	NHEK	skin
3	chr15:60118200-60120800	Enhancers	Hela-S3	cervix
4	chr15:60118400-60120600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:60119400-60124200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:60119600-60120600	Weak transcription	HMEC	breast
7	chr15:60119600-60121000	Weak transcription	Placenta	Placenta
8	chr15:60119600-60122400	Weak transcription	Thymus	Thymus
9	chr15:60120200-60120800	Weak transcription	Placenta Amnion	Placenta Amnion

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