Variant report

Variant	rs1867211
Chromosome Location	chr11:25637425-25637426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10501014	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501015	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767414	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834718	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10834719	0.91[AFR][1000 genomes]
rs10834720	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834721	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825886	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443151	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443163	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584037	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584038	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17242363	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17242426	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17242433	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17308106	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17308148	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822357	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838072	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099905	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120150	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35803980	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36170374	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4562787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55753339	1.00[ASN][1000 genomes]
rs55799830	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56020381	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56188166	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104511	1.00[ASN][1000 genomes]
rs7121871	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72872903	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72872905	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72872950	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72872955	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875140	1.00[ASN][1000 genomes]
rs72875199	1.00[ASN][1000 genomes]
rs72877024	1.00[ASN][1000 genomes]
rs72888525	1.00[ASN][1000 genomes]
rs72888534	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72888539	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72888549	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72888553	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72888562	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72888566	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358293	1.00[ASN][1000 genomes]
rs7946802	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894578	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983876	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1043467	chr11:25210613-25691086	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv540971	chr11:25210613-25691086	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv897128	chr11:25294229-25656452	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2757431	chr11:25564190-25638712	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2759811	chr11:25564190-25842666	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv897131	chr11:25569848-25720291	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv897132	chr11:25582331-25753192	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1041080	chr11:25585107-25931087	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1052448	chr11:25592509-25751220	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv540972	chr11:25592509-25751220	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1039190	chr11:25592509-25925352	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv540973	chr11:25592509-25925352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv897133	chr11:25592935-25645867	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv897134	chr11:25592935-25674033	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv2760212	chr11:25605844-25642425	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv2752495	chr11:25616540-25639583	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2755230	chr11:25616540-25639583	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv2755692	chr11:25616540-25639583	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv430366	chr11:25616540-25639583	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv897135	chr11:25618242-25674033	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv897136	chr11:25618242-25700470	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv1044636	chr11:25633583-25764193	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	esv2758259	chr11:25633803-25842666	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	nsv428252	chr11:25633803-25842666	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1867211	BBOX1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25635200-25640200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:25636400-25637800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:25637200-25637600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:25637200-25637800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:25637200-25637800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:25637200-25637800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:25637400-25637600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links