Variant report

Variant	rs72875140
Chromosome Location	chr11:25675223-25675224
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10501014	1.00[ASN][1000 genomes]
rs10501015	1.00[ASN][1000 genomes]
rs10767414	1.00[ASN][1000 genomes]
rs10834716	1.00[ASN][1000 genomes]
rs10834720	1.00[ASN][1000 genomes]
rs10834721	1.00[ASN][1000 genomes]
rs11825886	1.00[ASN][1000 genomes]
rs1443151	1.00[ASN][1000 genomes]
rs1443163	1.00[ASN][1000 genomes]
rs1584037	1.00[ASN][1000 genomes]
rs1584038	1.00[ASN][1000 genomes]
rs17242363	1.00[ASN][1000 genomes]
rs17242426	1.00[ASN][1000 genomes]
rs17242433	1.00[ASN][1000 genomes]
rs17308106	1.00[ASN][1000 genomes]
rs17308148	1.00[ASN][1000 genomes]
rs1822357	1.00[ASN][1000 genomes]
rs1822358	1.00[ASN][1000 genomes]
rs1838072	1.00[ASN][1000 genomes]
rs1867211	1.00[ASN][1000 genomes]
rs2099905	1.00[ASN][1000 genomes]
rs2120150	1.00[ASN][1000 genomes]
rs35803980	1.00[ASN][1000 genomes]
rs4562787	1.00[ASN][1000 genomes]
rs55753339	1.00[ASN][1000 genomes]
rs55799830	1.00[ASN][1000 genomes]
rs56020381	1.00[ASN][1000 genomes]
rs56188166	1.00[ASN][1000 genomes]
rs7104511	1.00[ASN][1000 genomes]
rs7121871	1.00[ASN][1000 genomes]
rs72872903	1.00[ASN][1000 genomes]
rs72872905	1.00[ASN][1000 genomes]
rs72872950	1.00[ASN][1000 genomes]
rs72872955	1.00[ASN][1000 genomes]
rs72875199	1.00[ASN][1000 genomes]
rs72877024	1.00[ASN][1000 genomes]
rs72888525	1.00[ASN][1000 genomes]
rs72888534	1.00[ASN][1000 genomes]
rs72888539	1.00[ASN][1000 genomes]
rs72888549	1.00[ASN][1000 genomes]
rs72888553	1.00[ASN][1000 genomes]
rs72888562	1.00[ASN][1000 genomes]
rs72888566	1.00[ASN][1000 genomes]
rs7358293	1.00[ASN][1000 genomes]
rs7946802	1.00[ASN][1000 genomes]
rs882257	1.00[ASN][1000 genomes]
rs894578	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1043467	chr11:25210613-25691086	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv540971	chr11:25210613-25691086	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759811	chr11:25564190-25842666	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv897131	chr11:25569848-25720291	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv897132	chr11:25582331-25753192	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1041080	chr11:25585107-25931087	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1052448	chr11:25592509-25751220	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv540972	chr11:25592509-25751220	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1039190	chr11:25592509-25925352	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv540973	chr11:25592509-25925352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv897136	chr11:25618242-25700470	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1044636	chr11:25633583-25764193	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2758259	chr11:25633803-25842666	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv428252	chr11:25633803-25842666	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv553873	chr11:25655220-25720706	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1054747	chr11:25671657-25727712	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1039100	chr11:25671657-25734282	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1051118	chr11:25672389-25722138	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1042406	chr11:25672389-25734282	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv526614	chr11:25674033-25730008	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv553874	chr11:25674033-25730008	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv553875	chr11:25674033-25732342	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3368784	chr11:25674426-25677524	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25675000-25677800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links