Variant report

Variant	rs1870438
Chromosome Location	chr15:31846905-31846906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10220758	1.00[EUR][1000 genomes]
rs12324344	1.00[EUR][1000 genomes]
rs12324688	1.00[EUR][1000 genomes]
rs16955871	1.00[EUR][1000 genomes]
rs16956870	0.82[AFR][1000 genomes]
rs2455701	1.00[EUR][1000 genomes]
rs57096428	1.00[EUR][1000 genomes]
rs58136622	1.00[EUR][1000 genomes]
rs58225563	1.00[EUR][1000 genomes]
rs58472566	1.00[EUR][1000 genomes]
rs58543954	1.00[EUR][1000 genomes]
rs58879698	1.00[EUR][1000 genomes]
rs59942460	1.00[EUR][1000 genomes]
rs59990341	1.00[EUR][1000 genomes]
rs60460548	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60585254	1.00[EUR][1000 genomes]
rs60832561	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61033035	1.00[EUR][1000 genomes]
rs61514382	1.00[EUR][1000 genomes]
rs61741252	1.00[EUR][1000 genomes]
rs73368664	1.00[EUR][1000 genomes]
rs73370522	1.00[EUR][1000 genomes]
rs73370534	1.00[EUR][1000 genomes]
rs73370564	1.00[EUR][1000 genomes]
rs73372505	1.00[EUR][1000 genomes]
rs73372523	1.00[EUR][1000 genomes]
rs73372539	1.00[EUR][1000 genomes]
rs73372540	1.00[EUR][1000 genomes]
rs73372552	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73372573	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73372576	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73372579	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73372589	1.00[EUR][1000 genomes]
rs73372595	1.00[EUR][1000 genomes]
rs73372596	1.00[EUR][1000 genomes]
rs73374536	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73374560	1.00[EUR][1000 genomes]
rs74012523	0.89[AFR][1000 genomes]
rs74012530	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74012535	1.00[EUR][1000 genomes]
rs74012545	1.00[EUR][1000 genomes]
rs74012546	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74012554	1.00[EUR][1000 genomes]
rs8029278	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2422205	chr15:31808878-32375021	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv2422269	chr15:31808878-32375021	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2422351	chr15:31808878-32375021	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv2422455	chr15:31808878-32375021	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1045095	chr15:31835044-32439113	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31830200-31849400	Weak transcription	Aorta	Aorta
2	chr15:31838200-31854200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:31841000-31848200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:31842400-31852600	Weak transcription	Colonic Mucosa	Colon
5	chr15:31843200-31850200	Weak transcription	Pancreas	Pancrea
6	chr15:31844800-31847200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:31844800-31847400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:31844800-31847400	Enhancers	HUVEC	blood vessel
9	chr15:31844800-31847400	Enhancers	NHEK	skin
10	chr15:31845000-31847400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:31845200-31848400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:31845400-31848600	Enhancers	Left Ventricle	heart
13	chr15:31846200-31847000	Enhancers	NHDF-Ad	bronchial
14	chr15:31846200-31847200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:31846200-31847200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:31846200-31847200	Enhancers	Osteobl	bone
17	chr15:31846200-31848000	Enhancers	Spleen	Spleen
18	chr15:31846400-31847000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:31846400-31847000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:31846400-31847000	Enhancers	NHLF	lung
21	chr15:31846400-31847200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:31846400-31847200	Enhancers	Brain Angular Gyrus	brain
23	chr15:31846400-31847200	Enhancers	Brain Anterior Caudate	brain
24	chr15:31846400-31847200	Enhancers	Brain Substantia Nigra	brain
25	chr15:31846400-31847200	Enhancers	NH-A	brain
26	chr15:31846400-31847400	Enhancers	Brain Hippocampus Middle	brain
27	chr15:31846400-31847400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr15:31846400-31848000	Enhancers	Adipose Nuclei	Adipose
29	chr15:31846400-31848000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
30	chr15:31846400-31848000	Enhancers	Right Atrium	heart
31	chr15:31846400-31848200	Enhancers	Lung	lung
32	chr15:31846400-31867800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:31846600-31847000	Enhancers	Brain Cingulate Gyrus	brain
34	chr15:31846600-31847200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr15:31846600-31847400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:31846800-31847000	Enhancers	Ovary	ovary
37	chr15:31846800-31847200	Enhancers	Fetal Muscle Leg	muscle
38	chr15:31846800-31848000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr15:31846800-31848600	Enhancers	Right Ventricle	heart

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