Variant report

Variant	rs73370522
Chromosome Location	chr15:31782453-31782454
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31507500..31508054-chr15:31782035..31782545,2	K562	blood:
2	chr15:31492924..31493816-chr15:31781800..31782800,3	K562	blood:
3	chr15:31729614..31735490-chr15:31778794..31782835,6	MCF-7	breast:
4	chr15:31748477..31753108-chr15:31776889..31783172,7	MCF-7	breast:
5	chr15:31775112..31777688-chr15:31780214..31782887,2	K562	blood:
6	chr15:31780894..31782465-chr15:31785232..31787543,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10220758	1.00[EUR][1000 genomes]
rs12324344	1.00[EUR][1000 genomes]
rs1870438	1.00[EUR][1000 genomes]
rs57096428	1.00[EUR][1000 genomes]
rs58136622	1.00[EUR][1000 genomes]
rs58225563	1.00[EUR][1000 genomes]
rs58472566	1.00[EUR][1000 genomes]
rs58543954	1.00[EUR][1000 genomes]
rs58879698	1.00[EUR][1000 genomes]
rs59942460	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59990341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460548	1.00[EUR][1000 genomes]
rs60585254	1.00[EUR][1000 genomes]
rs60832561	1.00[EUR][1000 genomes]
rs61033035	1.00[EUR][1000 genomes]
rs61361220	1.00[AMR][1000 genomes]
rs61514382	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61741252	1.00[EUR][1000 genomes]
rs73368664	1.00[EUR][1000 genomes]
rs73368676	1.00[AMR][1000 genomes]
rs73370534	1.00[EUR][1000 genomes]
rs73370564	1.00[EUR][1000 genomes]
rs73372505	1.00[EUR][1000 genomes]
rs73372523	1.00[EUR][1000 genomes]
rs73372539	1.00[EUR][1000 genomes]
rs73372540	1.00[EUR][1000 genomes]
rs73372552	1.00[EUR][1000 genomes]
rs73372573	1.00[EUR][1000 genomes]
rs73372576	1.00[EUR][1000 genomes]
rs73372579	1.00[EUR][1000 genomes]
rs73372589	1.00[EUR][1000 genomes]
rs73372595	1.00[EUR][1000 genomes]
rs73372596	1.00[EUR][1000 genomes]
rs73374536	1.00[EUR][1000 genomes]
rs73374560	1.00[EUR][1000 genomes]
rs74010669	1.00[AMR][1000 genomes]
rs74010670	1.00[AMR][1000 genomes]
rs74010672	1.00[AMR][1000 genomes]
rs74012530	1.00[EUR][1000 genomes]
rs74012535	1.00[EUR][1000 genomes]
rs74012545	1.00[EUR][1000 genomes]
rs74012546	1.00[EUR][1000 genomes]
rs74012554	1.00[EUR][1000 genomes]
rs8029278	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv1811144	chr15:31775602-31791836	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv568824	chr15:31776343-31787108	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31779800-31782600	Enhancers	Stomach Mucosa	stomach
2	chr15:31780000-31782600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:31780000-31782800	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:31780000-31782800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr15:31780200-31782800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr15:31780400-31782800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:31780600-31782600	Enhancers	Brain Angular Gyrus	brain
8	chr15:31781400-31786200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:31781800-31782600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr15:31781800-31782800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:31782000-31782600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:31782400-31782600	Weak transcription	Brain Substantia Nigra	brain
13	chr15:31782400-31782600	Weak transcription	A549	lung
14	chr15:31782400-31783800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:31782400-31784200	ZNF genes & repeats	GM12878-XiMat	blood
16	chr15:31782400-31784800	Weak transcription	Esophagus	oesophagus
17	chr15:31782400-31785000	Weak transcription	Ovary	ovary
18	chr15:31782400-31786400	Weak transcription	Brain Anterior Caudate	brain
19	chr15:31782400-31786800	Weak transcription	Pancreas	Pancrea
20	chr15:31782400-31787000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:31782400-31790200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:31782400-31821000	Weak transcription	Stomach Smooth Muscle	stomach

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