Variant report

Variant	rs61514382
Chromosome Location	chr15:31775225-31775226
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31775112..31777688-chr15:31780214..31782887,2	K562	blood:
2	chr15:31768996..31771688-chr15:31773371..31775681,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10220758	1.00[EUR][1000 genomes]
rs12324344	1.00[EUR][1000 genomes]
rs1870438	1.00[EUR][1000 genomes]
rs57096428	1.00[EUR][1000 genomes]
rs58136622	1.00[EUR][1000 genomes]
rs58225563	1.00[EUR][1000 genomes]
rs58472566	1.00[EUR][1000 genomes]
rs58543954	1.00[EUR][1000 genomes]
rs58879698	1.00[EUR][1000 genomes]
rs59942460	1.00[EUR][1000 genomes]
rs59990341	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460548	1.00[EUR][1000 genomes]
rs60585254	1.00[EUR][1000 genomes]
rs60832561	1.00[EUR][1000 genomes]
rs61033035	1.00[EUR][1000 genomes]
rs61361220	1.00[AMR][1000 genomes]
rs61741252	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73368664	1.00[EUR][1000 genomes]
rs73368676	1.00[AMR][1000 genomes]
rs73370522	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370534	1.00[EUR][1000 genomes]
rs73370564	1.00[EUR][1000 genomes]
rs73372505	1.00[EUR][1000 genomes]
rs73372523	1.00[EUR][1000 genomes]
rs73372539	1.00[EUR][1000 genomes]
rs73372540	1.00[EUR][1000 genomes]
rs73372552	1.00[EUR][1000 genomes]
rs73372573	1.00[EUR][1000 genomes]
rs73372576	1.00[EUR][1000 genomes]
rs73372579	1.00[EUR][1000 genomes]
rs73372589	1.00[EUR][1000 genomes]
rs73372595	1.00[EUR][1000 genomes]
rs73372596	1.00[EUR][1000 genomes]
rs73374536	1.00[EUR][1000 genomes]
rs73374560	1.00[EUR][1000 genomes]
rs74010669	1.00[AMR][1000 genomes]
rs74010670	1.00[AMR][1000 genomes]
rs74010672	1.00[AMR][1000 genomes]
rs74012530	1.00[EUR][1000 genomes]
rs74012535	1.00[EUR][1000 genomes]
rs74012545	1.00[EUR][1000 genomes]
rs74012546	1.00[EUR][1000 genomes]
rs74012554	1.00[EUR][1000 genomes]
rs8029278	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv1803983	chr15:31760986-31776503	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv1817856	chr15:31772875-31776398	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1798284	chr15:31772875-31776503	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1840109	chr15:31772875-31776503	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1824097	chr15:31772875-31778703	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv827281	chr15:31773227-31779565	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv827282	chr15:31773680-31778948	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3436746	chr15:31773760-31777958	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1822934	chr15:31773865-31776398	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3324341	chr15:31774110-31777508	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3388036	chr15:31774660-31777358	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31758200-31775400	Weak transcription	Pancreas	Pancrea
2	chr15:31765600-31779200	Weak transcription	Brain Angular Gyrus	brain
3	chr15:31765800-31775400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:31766000-31776400	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:31769000-31776400	Weak transcription	Brain Substantia Nigra	brain
6	chr15:31774200-31775400	Strong transcription	Brain Cingulate Gyrus	brain
7	chr15:31774400-31775400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr15:31774600-31775400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
9	chr15:31774600-31775400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr15:31774600-31775400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:31774600-31775400	Bivalent Enhancer	Colonic Mucosa	Colon
12	chr15:31774600-31775800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr15:31774600-31776600	Bivalent/Poised TSS	Thymus	Thymus
14	chr15:31774800-31775400	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr15:31774800-31775400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr15:31774800-31775400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr15:31774800-31775400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:31774800-31775600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:31774800-31775600	Bivalent Enhancer	Spleen	Spleen
20	chr15:31774800-31775800	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr15:31775000-31775400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
22	chr15:31775000-31775400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
23	chr15:31775000-31775400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:31775000-31775400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
25	chr15:31775000-31775400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:31775000-31775400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
27	chr15:31775000-31775400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:31775000-31775400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:31775000-31775400	Bivalent Enhancer	Placenta	Placenta
30	chr15:31775000-31775400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
31	chr15:31775000-31775400	Weak transcription	Gastric	stomach
32	chr15:31775000-31775400	Enhancers	Left Ventricle	heart
33	chr15:31775000-31775400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
34	chr15:31775000-31775400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
35	chr15:31775000-31775600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:31775000-31775600	Bivalent/Poised TSS	Small Intestine	intestine
37	chr15:31775000-31777200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
38	chr15:31775200-31775400	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
39	chr15:31775200-31775400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
40	chr15:31775200-31775400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:31775200-31775400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr15:31775200-31775400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:31775200-31775400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
44	chr15:31775200-31775400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
45	chr15:31775200-31775400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
46	chr15:31775200-31775400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:31775200-31775400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:31775200-31775400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:31775200-31775400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:31775200-31775400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose

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