Variant report

Variant	rs1871345
Chromosome Location	chr10:118895368-118895369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10128516	0.85[CEU][hapmap]
rs10886038	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs12244454	0.90[EUR][1000 genomes]
rs12268087	0.83[EUR][1000 genomes]
rs1865954	0.81[EUR][1000 genomes]
rs1865955	0.81[EUR][1000 genomes]
rs1898357	0.81[EUR][1000 genomes]
rs1905538	0.90[MEX][hapmap]
rs1947798	0.83[EUR][1000 genomes]
rs2118207	0.90[MEX][hapmap]
rs2420308	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs3847479	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6585429	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7078823	0.90[EUR][1000 genomes]
rs751231	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs751232	0.86[EUR][1000 genomes]
rs751233	0.83[EUR][1000 genomes]
rs7917897	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv825577	chr10:118887637-118905958	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1871345	KIAA1598	cis	Whole Blood	GTEx
rs1871345	KCNK18	cis	parietal	SCAN
rs1871345	WDR11	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118890400-118899000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:118894200-118896200	Weak transcription	Pancreas	Pancrea
3	chr10:118894400-118896200	Weak transcription	Right Atrium	heart
4	chr10:118894400-118896400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:118894600-118896000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:118894800-118895800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:118894800-118896000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr10:118894800-118896000	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr10:118895200-118895400	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
10	chr10:118895200-118896200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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