Variant report

Variant	rs12268087
Chromosome Location	chr10:118850216-118850217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10128516	0.86[EUR][1000 genomes]
rs10749237	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10787751	0.89[EUR][1000 genomes]
rs10886037	0.89[EUR][1000 genomes]
rs10886038	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10886040	0.91[EUR][1000 genomes]
rs11197887	0.88[EUR][1000 genomes]
rs11197892	0.90[EUR][1000 genomes]
rs11197899	0.90[EUR][1000 genomes]
rs12244454	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1865954	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1865955	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1871345	0.83[EUR][1000 genomes]
rs1898349	0.86[EUR][1000 genomes]
rs1898351	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1898357	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1947798	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420308	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3847479	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752028	0.88[EUR][1000 genomes]
rs6585429	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7069235	0.85[EUR][1000 genomes]
rs7072663	0.87[EUR][1000 genomes]
rs7078823	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7085083	0.92[EUR][1000 genomes]
rs7087662	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093171	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7917897	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12268087	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118850200-118851200	Weak transcription	Brain Germinal Matrix	brain

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