Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118861015..118863871-chr10:118866874..118868397,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10128516	0.92[CEU][hapmap]
rs10749237	0.86[EUR][1000 genomes]
rs10787751	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10886037	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10886038	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs10886040	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197887	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11197892	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12244454	0.83[EUR][1000 genomes]
rs12268087	0.90[EUR][1000 genomes]
rs1865954	0.88[EUR][1000 genomes]
rs1865955	0.88[EUR][1000 genomes]
rs1898349	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1898351	0.86[EUR][1000 genomes]
rs1898357	0.88[EUR][1000 genomes]
rs1947798	0.90[EUR][1000 genomes]
rs2420308	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs3847479	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4752028	1.00[CEU][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes]
rs7069235	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7072663	0.81[EUR][1000 genomes]
rs7078823	0.82[EUR][1000 genomes]
rs7085083	0.85[EUR][1000 genomes]
rs7087662	0.84[EUR][1000 genomes]
rs7093171	0.85[EUR][1000 genomes]
rs751232	0.82[EUR][1000 genomes]
rs7917897	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11197899	KIAA1598	cis	multi-tissue	Pritchard
rs11197899	GFRA1	cis	parietal	SCAN
rs11197899	KIAA1598	cis	Whole Blood	GTEx
rs11197899	VWA2	cis	cerebellum	SCAN
rs11197899	DKFZp781N1041	cis	multi-tissue	Pritchard
rs11197899	ADRB1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118861000-118862000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:118861600-118862000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:118861600-118862200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr10:118861600-118862400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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