Variant report
| Variant | rs1898349 |
|---|---|
| Chromosome Location | chr10:118817067-118817068 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:118816372..118819335-chr10:118823062..118827283,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10128516 | 0.85[EUR][1000 genomes] |
| rs10749237 | 0.92[EUR][1000 genomes] |
| rs10787751 | 0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10886037 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10886038 | 0.88[EUR][1000 genomes] |
| rs10886040 | 0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11197887 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11197892 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11197899 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12268087 | 0.86[EUR][1000 genomes] |
| rs1865954 | 0.88[EUR][1000 genomes] |
| rs1865955 | 0.88[EUR][1000 genomes] |
| rs1898351 | 0.92[EUR][1000 genomes] |
| rs1898357 | 0.88[EUR][1000 genomes] |
| rs1947798 | 0.86[EUR][1000 genomes] |
| rs2420308 | 0.88[EUR][1000 genomes] |
| rs3847479 | 0.88[EUR][1000 genomes] |
| rs4752028 | 0.96[EUR][1000 genomes] |
| rs7069235 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7072663 | 0.86[EUR][1000 genomes] |
| rs7085083 | 0.91[EUR][1000 genomes] |
| rs7087662 | 0.81[EUR][1000 genomes] |
| rs7093171 | 0.90[EUR][1000 genomes] |
| rs7917897 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832002 | chr10:118797070-119005840 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 24 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1898349 | KIAA1598 | cis | Whole Blood | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:118816800-118817400 | Enhancers | Brain Germinal Matrix | brain |
