Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10128516	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs10749237	0.87[EUR][1000 genomes]
rs10787751	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10886037	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10886038	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs11197887	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11197892	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11197899	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12244454	0.84[EUR][1000 genomes]
rs12268087	0.91[EUR][1000 genomes]
rs1865954	0.89[EUR][1000 genomes]
rs1865955	0.89[EUR][1000 genomes]
rs1898349	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1898351	0.87[EUR][1000 genomes]
rs1898357	0.89[EUR][1000 genomes]
rs1947798	0.91[EUR][1000 genomes]
rs2420308	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs3847479	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs4752028	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7069235	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7072663	0.81[EUR][1000 genomes]
rs7078823	0.83[EUR][1000 genomes]
rs7085083	0.86[EUR][1000 genomes]
rs7087662	0.85[EUR][1000 genomes]
rs7093171	0.85[EUR][1000 genomes]
rs751232	0.83[EUR][1000 genomes]
rs7917897	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10886040	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118845800-118846400	Enhancers	Hela-S3	cervix
2	chr10:118845800-118846600	Enhancers	HMEC	breast
3	chr10:118846200-118846600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:118846200-118848000	Weak transcription	A549	lung

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