Variant report

Variant	rs1898357
Chromosome Location	chr10:118834301-118834302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118596503..118597064-chr10:118833867..118834378,2	MCF-7	breast:
2	chr10:118705537..118708825-chr10:118833697..118836259,3	MCF-7	breast:
3	chr10:118832679..118834580-chr10:118836577..118838384,2	MCF-7	breast:
4	chr10:118556304..118557034-chr10:118834191..118834868,3	MCF-7	breast:
5	chr10:118556196..118556736-chr10:118833939..118834764,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10128516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10749237	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10787751	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10886037	0.91[EUR][1000 genomes]
rs10886038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10886040	0.89[EUR][1000 genomes]
rs11197887	0.90[EUR][1000 genomes]
rs11197892	0.88[EUR][1000 genomes]
rs11197899	0.88[EUR][1000 genomes]
rs12244454	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12268087	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1865954	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1865955	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1871345	0.81[EUR][1000 genomes]
rs1898349	0.88[EUR][1000 genomes]
rs1898351	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1947798	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420308	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3847479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752028	0.92[CEU][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs6585429	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7069235	0.87[EUR][1000 genomes]
rs7072663	0.89[EUR][1000 genomes]
rs7078823	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7085083	0.93[EUR][1000 genomes]
rs7087662	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7093171	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7917897	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1898357	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118832800-118835200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:118833200-118835000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:118834200-118834400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:118834200-118834800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:118834200-118834800	Enhancers	A549	lung

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