Variant report
| Variant | rs7069235 |
|---|---|
| Chromosome Location | chr10:118786985-118786986 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235742 | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10128516 | 0.84[EUR][1000 genomes] |
| rs10749237 | 0.91[EUR][1000 genomes] |
| rs10787751 | 0.96[EUR][1000 genomes] |
| rs10886037 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10886038 | 0.87[EUR][1000 genomes] |
| rs10886040 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11197887 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11197892 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11197899 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12268087 | 0.85[EUR][1000 genomes] |
| rs1865954 | 0.87[EUR][1000 genomes] |
| rs1865955 | 0.87[EUR][1000 genomes] |
| rs1898349 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1898351 | 0.91[EUR][1000 genomes] |
| rs1898357 | 0.87[EUR][1000 genomes] |
| rs1947798 | 0.85[EUR][1000 genomes] |
| rs2420308 | 0.87[EUR][1000 genomes] |
| rs3847479 | 0.87[EUR][1000 genomes] |
| rs4752028 | 0.95[EUR][1000 genomes] |
| rs7072663 | 0.95[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7085083 | 0.96[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7093171 | 0.89[EUR][1000 genomes] |
| rs7917897 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2755506 | chr10:118748764-118800107 | Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7069235 | KIAA1598 | cis | Whole Blood | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
