Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118705537..118708825-chr10:118833697..118836259,3	MCF-7	breast:
2	chr10:118764171..118766550-chr10:118834515..118836034,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10128516	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10749237	0.88[EUR][1000 genomes]
rs10787751	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10886037	0.99[EUR][1000 genomes]
rs10886038	0.92[CEU][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs10886040	0.97[EUR][1000 genomes]
rs11197887	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197892	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11197899	0.96[EUR][1000 genomes]
rs12244454	0.82[EUR][1000 genomes]
rs12268087	0.88[EUR][1000 genomes]
rs1865954	0.90[EUR][1000 genomes]
rs1865955	0.90[EUR][1000 genomes]
rs1898349	0.96[EUR][1000 genomes]
rs1898351	0.88[EUR][1000 genomes]
rs1898357	0.90[EUR][1000 genomes]
rs1947798	0.88[EUR][1000 genomes]
rs2420308	0.92[CEU][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs3847479	0.92[CEU][hapmap];0.92[YRI][hapmap];0.90[EUR][1000 genomes]
rs7069235	0.95[EUR][1000 genomes]
rs7072663	0.82[EUR][1000 genomes]
rs7078823	0.82[EUR][1000 genomes]
rs7085083	0.87[EUR][1000 genomes]
rs7087662	0.83[EUR][1000 genomes]
rs7093171	0.86[EUR][1000 genomes]
rs751232	0.82[EUR][1000 genomes]
rs7917897	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4752028	KIAA1598	cis	Whole Blood	GTEx
rs4752028	GFRA1	cis	parietal	SCAN
rs4752028	VWA2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118832800-118835200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:118833200-118835000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:118834800-118837600	Weak transcription	A549	lung

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