Variant report

Variant	rs1876536
Chromosome Location	chr4:77185529-77185530
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77185052..77186767-chr4:77189879..77191604,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11097313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097314	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933305	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11934863	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11946806	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12643261	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs12643334	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12651582	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs13117238	0.82[JPT][hapmap]
rs13119644	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13122345	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13123108	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13137733	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13151765	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1441909	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1441910	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1441913	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1441914	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1530296	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1530298	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1583944	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1588214	0.82[JPT][hapmap]
rs1596116	0.82[JPT][hapmap]
rs17236158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17308336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876537	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876538	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1876539	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1876540	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1876541	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1876542	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1876543	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1969148	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1969149	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2119731	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2119732	0.82[ASN][1000 genomes]
rs2289514	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2869863	0.89[ASN][1000 genomes]
rs2869864	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2869865	0.82[ASN][1000 genomes]
rs2869866	0.82[ASN][1000 genomes]
rs2869870	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2869871	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34034456	0.82[ASN][1000 genomes]
rs34638846	0.89[ASN][1000 genomes]
rs3733250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3733253	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3821980	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859437	0.82[JPT][hapmap]
rs4859439	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4859440	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4859441	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859641	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4859643	0.82[JPT][hapmap]
rs4859648	0.82[JPT][hapmap]
rs4859650	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859651	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859652	0.87[ASN][1000 genomes]
rs4859653	0.85[ASN][1000 genomes]
rs4859654	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859655	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859656	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859657	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56060342	0.87[ASN][1000 genomes]
rs58804635	0.87[ASN][1000 genomes]
rs59864739	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60397621	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60876302	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61595008	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6813980	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6814195	0.82[ASN][1000 genomes]
rs6823078	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6846983	0.82[JPT][hapmap]
rs6849069	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6851219	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs71607346	0.89[ASN][1000 genomes]
rs736634	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs736636	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7665023	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7677256	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7687964	0.87[ASN][1000 genomes]
rs768979	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7699714	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964051	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1876536	FAM47E	cis	Thyroid	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77173600-77202000	Weak transcription	Psoas Muscle	Psoas
2	chr4:77173800-77186000	Weak transcription	Pancreas	Pancrea
3	chr4:77173800-77191400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:77173800-77196000	Weak transcription	Adipose Nuclei	Adipose
5	chr4:77173800-77215800	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:77174000-77185600	Weak transcription	Brain Angular Gyrus	brain
7	chr4:77174200-77186000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:77176200-77186400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:77177800-77199200	Weak transcription	Placenta	Placenta
10	chr4:77178800-77201200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:77179000-77186800	Weak transcription	Brain Substantia Nigra	brain
12	chr4:77180000-77202000	Weak transcription	Gastric	stomach
13	chr4:77182000-77194600	Weak transcription	Stomach Mucosa	stomach
14	chr4:77182400-77193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:77183200-77193000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:77183800-77186000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:77185000-77188600	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr4:77185000-77189000	Weak transcription	Right Ventricle	heart
19	chr4:77185000-77192600	Weak transcription	Left Ventricle	heart
20	chr4:77185200-77186600	Strong transcription	Fetal Intestine Large	intestine
21	chr4:77185200-77188600	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:77185400-77185800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:77185400-77186400	Strong transcription	Aorta	Aorta
24	chr4:77185400-77186600	Strong transcription	Brain Anterior Caudate	brain
25	chr4:77185400-77187000	Strong transcription	Fetal Intestine Small	intestine
26	chr4:77185400-77189000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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